Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2957 ATGGACAACAATCAACAATCTCAACCACCATCTATAATGCAAGATCAAGCAGTGGTAAGAAGACACTACAAAGGGGTTAGGCACCGGCCATGGGGGAAATGGGCCGCGGAGATTCGAGATCCGAAGAAGGCAGCAAGGGTTTGGCTTGGAACTTTCCAAACTGCCGAGGAAGCTGCACTTGCTTATGACGAAGCCGCTCTTAGATTCAAAGGAAGCAAAGCTAAGCTCAACTTTCCAGAAAGGGTTCATCTCACTCGTGAATTCGGTTACCTCACTAACCGTCCTCCACAACCGGAAATTGGCAATAACAATGGTCAACAAGTACCTAGTACTACTACCACAATTTCTAATGCTTCAGCTTCACAATTTTCTGGCAGTAACAACAACAATTTCAATTATGCTTTGCCTCATTTGTATGGGAACCATAAAAATATGTTTGTTTCTTCCTCTTCGTCTTCATCTTCATCTTCTGGATTTTCTATGCAATTTGGAGGTTCTTCTTCTAAGTCTCCTCCTAGGAATTAA 525 0.4286 MDNNQQSQPPSIMQDQAVVRRHYKGVRHRPWGKWAAEIRDPKKAARVWLGTFQTAEEAALAYDEAALRFKGSKAKLNFPERVHLTREFGYLTNRPPQPEIGNNNGQQVPSTTTTISNASASQFSGSNNNNFNYALPHLYGNHKNMFVSSSSSSSSSSGFSMQFGGSSSKSPPRN* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2957 174 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Ahy13g2957 174 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Ahy13g2957 174 PANTHER DNA-BINDING DOMAIN 15 166 IPR044808 GO:0003700|GO:0009873
Ahy13g2957 174 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Ahy13g2957 174 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Ahy13g2957 174 CDD AP2 22 80 IPR001471 GO:0003700|GO:0006355
Ahy13g2957 174 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Ahy13g2957 174 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABR1 15 166 - -
Ahy13g2957 174 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Ahy13g2957 174 MobiDBLite consensus disorder prediction 96 112 - -
Ahy13g2957 174 MobiDBLite consensus disorder prediction 147 174 - -
Ahy13g2957 174 Gene3D AP2/ERF domain 21 81 IPR036955 GO:0003700|GO:0006355
Ahy13g2957 174 MobiDBLite consensus disorder prediction 92 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2957 Ahy-Chr13 119483643 119486309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2957 2 99 AP2-EREBP Transcription Factor Family AT5G61890 72.000 1.22e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy13g2957 AP2 7.50E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2957 - - gmx:100793410 165.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2957 13 119483643 119486309 Ahy3g2618 3 117024474 117026785 hybridization
Ahy13g2957 13 119483643 119486309 Ahy18g2896 18 133703750 133706115 PCT
Ahy18g2896 18 133703750 133706115 Ahy13g2957 13 119483643 119486309 PCT