Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2951 ATGCCTTCTCCAATGGTGGATCAGAGGGGAGTTTCTGCTTCATCTCACTTTTTTGATGACATTTCTTTTCGTTCTGAGAGGGATGCTGGAATACGGAAGTTCAAATCCATTCATGATCAATATCCACAAGGAAAAAATGGAATGATAGCATCCCCTGGAAGCAATTTGAATTCTTCATCTGTACTGGAAAGAAGTGCAAAATCTGGTTTGCCAATGTCATGCACCAGTCTATCTATTGAAAATGTGGAACAGCTAAAATTTGGTGGTGAAGGCATTTTTGATGCGCTGATGGTTTCCAAGGAATCATCACATTATCATCACAGATCAAGGTCTGATGTATGTATGCGCTCCGGACCGAACTCACCTGGTGTAATTGGGGACAAGTTTGTTTCCAGTGCAGCCACATGTGAAAGTACTCTATTCTCGAGCTCATTGTCTGATATGTTTTGCCAAAAGTTGAGGTTGTTCGGGAAAGATGCTTTATCTGATCAGCCCGATATTATTGATTCTGTTCCCGAGGAAGAGCCTTATAAATCTCTTGAAGAAATAGAGGCTGAAACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTCAATGATGAGTCAAGATATAACAATACTAATGCCAGAAAAAATGATGACTTGGAGGATTTTGACTTGTTTAGCAGTGGGGGAGGCATGGAGCTGGAAAGAGATGAACATCTGAATGCAGGATTAAGAACTAGTGCTCTGGAGGGAGATTCAGGTTTTGTTGGAGGTCCTAAAGGAAAATTTCCTTTTGTCACACAACCTTCTAGAACACTCTTTGTTCGAAACATTAATAGCAACGTAGACGACTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATTAGAACCATGTATACAGCTTGTAAACATCGTGGTTTTGTCATGATTTCTTATTTTGACCTAAGAGCTGCACAAAGTGCAACGCAAGAACTTCAAAATTGGCCACTGAGGTTAAGGAAACTTGATATACATTATTCAATTCCAAAGGTCAATGCTTCTGAGAAGGATATTGGCCATGGTACGCTGATGCTATCTGGTCTTGATTCATCTATTTCAAATGATGAACTCAAACAGATTTTTGGATTTTATGGAGATATTAAAGAAATTTTTGAATCTCCTGAAATGAAACAGCACAAATTTATAGAGTTTTATGATGTACGAGCTGCAGAAGCTGCTCTTCGTGCATTGAACAGGATTGACATTGCTGGGAAGCAGATCAAGATTGAACCAGGACATCCTAGTTTGATGCAGCAGTCTCATAAGGGGCAAGATGAACCAGATCTTGGTCAGAGTATTATTGACAACTTAGCACTGAGACAGAAGGCAACGGTGTCTGCTGGAGTGATTGGATCTGGCTTGGAAAATGGTTACAATCAGGGATTTCAATCTGGAATGGCGCAACCTTTAAACACGTATAATGATAATGCATTTGGACATATAAATTCTAGCATTCACAACACAGTGAGAGGATCATCAGCTTCAAATGTTTCTGGCGTTTCTGAGTCCAATATATTTGTTGACGCAATAAAATTTGCTTCTAGTCCGAGATTTCATCCTCATTCCTTACCCGAGTATCATGATACTTTAGCTAATGGTAGTCCTTATAACTTTTCAAGCACCATTAGCAACATGACTAGCAGTGTCAATACTGGAGTGACCGAAGCCTCTGACAGCAGGCACATTCAGGGAATGGGCTCAACTGGGAACTTAGCAGAATTTAATGCAGGAGGAAATGGGATCCGGTCACATCATGGACTTTATCAGATGTGGAACAGCTCCAATTTGCATCAGCAGTCTTCATCAGGTACCATGCTGTGGCAGAAAAGACCATCATTTGTTAATCTTCCACAGATGCCAAGCTTTGCCATAACACCACCTCATATGTTGAGGTCACAACACATGGACCACAATGTTGCATCAGCACCAGTGTCACCTTGGGGAAGGCAACATTCGCACCTAGCAGAATCCCCTGATGCTTCTGGTTTTGTGGGAAGTGGAGGTTTTCAGGGTTCCTGGCAATTGCTTTCTCCAGAATTTTCTCCTCGTTTGTTTCCTCATGCCAGTCCTAAAGGCACTGAACTGCCATCCAATGCTGGGCAGAGTTCTCCTAAGCATCATGGTTTCCCTGGAAGACATTCTATGAATTCAACGTCAAAAATTGATTCTGCCAATGAACGGATGAGAAGCCTTTATCACCGTAGGAGTGAAACAAACAATGCTGATAAAAAACAATTTGAACTTGACCTAGGTCGCATAATGCAGGGGGAAGACACCCGAACAACACTTATGATAAAAAATATTCCCAACAAGTATACCTCAAAGATGCTTCTTGCTGCTATTGATGAGCGTTGTAGGGGAACTTATGATTTTCTGTATTTGCCAATTGACTTCAAGAATAAATGTAATGTTGGTTATGCATTTATAAATATGATCGATGCTGCTCAAATTATTCCTTTCCACCAGACTTTTAATGGGAAAAAATGGGAGAAGTTCAATAGTGAAAAGGTAGCCTCACTTGCATATGCCCGAATTCAAGGAAAAGCTTCTCTCATTGCCCATTTCCAGAACTCAAGCCTGATGAATGAAGATAAACGTTGTCGCCCTATTCTCTTCCACACTGATGGTCCAAATGCTGGTGATCCAGAGCCTTTTCCTATGGGTACCAATATTAGAGTGAGACCTGGAAAATCTCGCACTGCTGGTAATGACGAAAGTCGCAACCAACCAAGTCCAAGAATTTTGATAAATGTAGAGTCTCCTAATGGACTTGACTCTGCTTAG 2826 0.4105 MPSPMVDQRGVSASSHFFDDISFRSERDAGIRKFKSIHDQYPQGKNGMIASPGSNLNSSSVLERSAKSGLPMSCTSLSIENVEQLKFGGEGIFDALMVSKESSHYHHRSRSDVCMRSGPNSPGVIGDKFVSSAATCESTLFSSSLSDMFCQKLRLFGKDALSDQPDIIDSVPEEEPYKSLEEIEAETIGNLLPDEDDLFSGVNDESRYNNTNARKNDDLEDFDLFSSGGGMELERDEHLNAGLRTSALEGDSGFVGGPKGKFPFVTQPSRTLFVRNINSNVDDSELKALFEQYGDIRTMYTACKHRGFVMISYFDLRAAQSATQELQNWPLRLRKLDIHYSIPKVNASEKDIGHGTLMLSGLDSSISNDELKQIFGFYGDIKEIFESPEMKQHKFIEFYDVRAAEAALRALNRIDIAGKQIKIEPGHPSLMQQSHKGQDEPDLGQSIIDNLALRQKATVSAGVIGSGLENGYNQGFQSGMAQPLNTYNDNAFGHINSSIHNTVRGSSASNVSGVSESNIFVDAIKFASSPRFHPHSLPEYHDTLANGSPYNFSSTISNMTSSVNTGVTEASDSRHIQGMGSTGNLAEFNAGGNGIRSHHGLYQMWNSSNLHQQSSSGTMLWQKRPSFVNLPQMPSFAITPPHMLRSQHMDHNVASAPVSPWGRQHSHLAESPDASGFVGSGGFQGSWQLLSPEFSPRLFPHASPKGTELPSNAGQSSPKHHGFPGRHSMNSTSKIDSANERMRSLYHRRSETNNADKKQFELDLGRIMQGEDTRTTLMIKNIPNKYTSKMLLAAIDERCRGTYDFLYLPIDFKNKCNVGYAFINMIDAAQIIPFHQTFNGKKWEKFNSEKVASLAYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNIRVRPGKSRTAGNDESRNQPSPRILINVESPNGLDSA* 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2951 941 SUPERFAMILY RNA-binding domain, RBD 776 861 IPR035979 GO:0003676
Ahy13g2951 941 MobiDBLite consensus disorder prediction 654 674 - -
Ahy13g2951 941 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 934 - -
Ahy13g2951 941 MobiDBLite consensus disorder prediction 916 941 - -
Ahy13g2951 941 Pfam RNA recognition motif 2 774 870 IPR007201 -
Ahy13g2951 941 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 934 - -
Ahy13g2951 941 SUPERFAMILY RNA-binding domain, RBD 268 426 IPR035979 GO:0003676
Ahy13g2951 941 MobiDBLite consensus disorder prediction 697 733 - -
Ahy13g2951 941 CDD RRM1_MEI2_like 269 344 IPR034453 -
Ahy13g2951 941 Gene3D - 264 352 IPR012677 -
Ahy13g2951 941 MobiDBLite consensus disorder prediction 889 941 - -
Ahy13g2951 941 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 422 IPR000504 GO:0003723
Ahy13g2951 941 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 332 IPR000504 GO:0003723
Ahy13g2951 941 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 343 IPR000504 GO:0003723
Ahy13g2951 941 CDD RRM3_MEI2_like 777 862 IPR034454 -
Ahy13g2951 941 SMART rrm1_1 776 852 IPR000504 GO:0003723
Ahy13g2951 941 SMART rrm1_1 356 424 IPR000504 GO:0003723
Ahy13g2951 941 SMART rrm1_1 271 339 IPR000504 GO:0003723
Ahy13g2951 941 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 428 IPR000504 GO:0003723
Ahy13g2951 941 Gene3D - 353 447 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2951 Ahy-Chr13 119212747 119220623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2951 268 438 Eukaryotic Initiation Factors Gene Family AT1G71770 24.615 1.61e-06 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2951 13 119212747 119220623 Ahy3g2613 3 116893837 116901558 hybridization
Ahy13g2951 13 119212747 119220623 Ahy18g2900 18 133744809 133752636 PCT
Ahy18g2900 18 133744809 133752636 Ahy13g2951 13 119212747 119220623 PCT