Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2939 ATGGCATCAACAGAGGAATTGATGAACAGAAAAGTGGAAACCAACAACAACAATGGTGGAATGAACGCAGCAGAGGCTCAAAACGCTTCTTCTTCTTCTTCATCGTCATCAGCTAGAGACGCGGAAGCTGCGCTTTACAAGGAGCTATGGCACGCGTGTGCAGGTCCCCTTGTGACAGTGCCGAAAGAAGGAGAGCTCGTCTTCTATTTCCCTCAAGGACATATTGAGCAGGTGGAGGCGTCCACGAATCAAGTTGCGGAGCAGCATATGCCGGTTTACGATCTCCCGTCCAAGATCCTTTGTCGCGTCATCAACGTCATGCTCAAGGCGGAGCCGGACACAGATGAGGTGTTTGCTCAGGTGACTTTACTTCCGGAGCCAAATCAAGATGAGAATGCCGTGGAGAAAGCGCCTCCGCCAGCTCCGCCGCCACGATTTCACGTGCATTCGTTTTGCAAGACTCTAACGGCATCCGACACTAGTACTCATGGTGGATTTTCAGTGTTGAGACGACACGCTGACGAGTGTCTTCCTCCCTTGGACATGTCAAAGCAGCCACCCACCCAGGAACTGGTGGCCAAGGATCTCCATGGAAATGAGTGGCGATTCAGGCATATCTTTCGCGGTCAACCGCGCAGACACTTACTACAAAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTGGTTGCTGGGGATGCATTTATATTTCTGAGAGGTGAGAATGGGGAACTTCGAGTTGGTGTCAGGCGCGCAATGAGACAGCAGGGTAATGTTCCATCATCAGTTATCTCTAGCCACAGCATGCATCTTGGTGTGCTTGCAACTGCATGGCATGCCATCTTGACTGGGACCATGTTCACTGTTTATTACAAGCCGAGGACCAGTCCAGCTGAATTCATTGTACCATATGATCAGTATATGGAGTCTCTTAAAAACAATTATACTATAGGATTGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCTGAGCAAAGGTTCACTGGTACTATTGTTGGGATTGAAGATGCCGACTCCAAGAGGTGGCCAGAATCCAAATGGAGAAGTCTAAAGGTGAGATGGGACGAAACATCTACCATACCTCGTCCTGAGAGAGTTTCCCCTTGGAAAATAGAGCCTGCTCTTGCTCCGCCAGCTCTAAACCCTCTTCCAATGCCCAGGCCTAAAAGGCCTCGTTCGAATGCCATTCCATCATCCCCAGATTCTTCTGTTCTTACTCGTGAAGCATCATCTAAAGCGAGCGTAGACCCTTTACCACCAAGCGGATTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGCGGGGCAACTTTGCAGAAAGTAATGAGTCGGATACTGCTGAGAAGTCTGTCGTGTGGCCACCAGCAGTAGATGATGAGAAGATTGATGTTGTTTCTACTTCTAGAAGGTATGGGCCAGAGAGCTGGATGTCAATGGGGAGGCATGAGCTGCCATACTCGGATCTTCTTTCAGGCTTTGGAGCCAATGGAGATCCTTCTTCCCGGTCATCCTTGATTGATCAGTCTGATTCTGTTGCTAACCCTGGTAGAAAGCATTTATTAGATCGTGAAGGCAAAACTAATGTGCCAAGTAGCAGTCCATGGTCTGTAATACCTTCTAGTTTATCACTCAACCTCTTGGAGCCTAATGCAAAAGTTTCTGCCCAAGGTGGTGATGCAGCTTACCAAATTCGAGGGAACTTGAGGTATGGTGCATTTGGTGAATACCCTGTGCTTCATGGTCATAAAGTTGAGAATTCACATGGAAACTTGTCAATGCCACCACCACCTCTTGCTCAATATGAGAGTCCTCGTTCCAAGGAACTGCTGCCTAAACCGAAATCAGCGAAAACCTCTGATGTTGCAAGACCCAAAGATGGTGACTGTAAACTATTTGGCATCTCACTTCTCAGTAGCCCACCTGCACCAGAGACTCCTACATCACAAAGAAATGTTGCAAGTGAGACAGTGAGTCACACGTACCCCACACACCAGCATCGTACATTTGAAAATGAACAGAAGTCTGAAAATTCAATGGGCTCTAAAGCAGCAGATGGTCTAGCTGTAGTCGATGAGCTGCATCTGAGAGATGTTCAACTCAAACCACACAGTGGTTCTGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGGATTGCCCTTGGTAGGTCAGTGGATCTTACGAAATTCAGTGGCTATGGTGAATTAATTGCTGAATTGGATCAGTTGTTTGAATTTGGGGGTGAACTGATTTCTGCCAAAAAGGACTGGCTTACTGTATACACTGACAATGAGGGCGACATGATGCTTGTTGGTGATGATCCATGGCAGGAGTTTTGTGCAATGGTACGTAAAATTTACATCTATCCCAGAGAGGAGATCCAGAAAATGAGCCCTGGTACTTTAAGTTCAAAAAACGAAGAGAACCAGTTGGCTAGTGAAGGTGTTGATGCACAAGAAATCAGATGCCAGCCGCATCACCCAACTTCAACGCCTGATCATTCTTAG 2532 0.4739 MASTEELMNRKVETNNNNGGMNAAEAQNASSSSSSSSARDAEAALYKELWHACAGPLVTVPKEGELVFYFPQGHIEQVEASTNQVAEQHMPVYDLPSKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKAPPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGLRFKMRFEGEEAPEQRFTGTIVGIEDADSKRWPESKWRSLKVRWDETSTIPRPERVSPWKIEPALAPPALNPLPMPRPKRPRSNAIPSSPDSSVLTREASSKASVDPLPPSGFPRVLQGQEFSTLRGNFAESNESDTAEKSVVWPPAVDDEKIDVVSTSRRYGPESWMSMGRHELPYSDLLSGFGANGDPSSRSSLIDQSDSVANPGRKHLLDREGKTNVPSSSPWSVIPSSLSLNLLEPNAKVSAQGGDAAYQIRGNLRYGAFGEYPVLHGHKVENSHGNLSMPPPPLAQYESPRSKELLPKPKSAKTSDVARPKDGDCKLFGISLLSSPPAPETPTSQRNVASETVSHTYPTHQHRTFENEQKSENSMGSKAADGLAVVDELHLRDVQLKPHSGSARSCTKVHKKGIALGRSVDLTKFSGYGELIAELDQLFEFGGELISAKKDWLTVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPREEIQKMSPGTLSSKNEENQLASEGVDAQEIRCQPHHPTSTPDHS* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2939 843 SUPERFAMILY DNA-binding pseudobarrel domain 147 280 IPR015300 -
Ahy13g2939 843 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 825 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy13g2939 843 ProSiteProfiles PB1 domain profile. 717 799 IPR000270 GO:0005515
Ahy13g2939 843 MobiDBLite consensus disorder prediction 506 520 - -
Ahy13g2939 843 SMART B3_2 151 253 IPR003340 GO:0003677
Ahy13g2939 843 SUPERFAMILY CAD & PB1 domains 720 794 - -
Ahy13g2939 843 MobiDBLite consensus disorder prediction 1 36 - -
Ahy13g2939 843 Gene3D - 314 384 - -
Ahy13g2939 843 MobiDBLite consensus disorder prediction 805 821 - -
Ahy13g2939 843 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677
Ahy13g2939 843 Gene3D - 148 253 IPR015300 -
Ahy13g2939 843 Pfam AUX/IAA family 760 803 IPR033389 -
Ahy13g2939 843 MobiDBLite consensus disorder prediction 383 434 - -
Ahy13g2939 843 MobiDBLite consensus disorder prediction 595 633 - -
Ahy13g2939 843 MobiDBLite consensus disorder prediction 403 418 - -
Ahy13g2939 843 MobiDBLite consensus disorder prediction 669 688 - -
Ahy13g2939 843 Pfam Auxin response factor 277 359 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ahy13g2939 843 PANTHER AUXIN RESPONSE FACTOR 2 30 825 - -
Ahy13g2939 843 MobiDBLite consensus disorder prediction 383 401 - -
Ahy13g2939 843 Gene3D - 713 806 - -
Ahy13g2939 843 MobiDBLite consensus disorder prediction 506 543 - -
Ahy13g2939 843 Pfam B3 DNA binding domain 151 252 IPR003340 GO:0003677
Ahy13g2939 843 CDD B3_DNA 149 251 IPR003340 GO:0003677
Ahy13g2939 843 MobiDBLite consensus disorder prediction 616 633 - -
Ahy13g2939 843 MobiDBLite consensus disorder prediction 805 843 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2939 Ahy-Chr13 118553910 118558782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2939 23 830 B3 DNA Binding Superfamily AT5G62000 66.182 0.0 1086
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ahy13g2939 B3 1.60E-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2939 - - gmx:100815956 1354.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2939 13 118553910 118558782 Ahy8g2622 8 49399532 49404699 PCT