Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2938 ATGTCCAGCACAAACAGCACTTGTCTCATGGAAGAAAGAGAGCTCTCTGATGCCAACAACACCTATGAACTTGTCCCTATTCCTATCATGCCTCCTCCTCAGGTAGTCAATGAAGATTGGTACATGCCAAACAACAACATCAACAACACTGTTACTACTATCCAAAATCAACCTCCGGATTCAGATTCAGATACAAGGGACATGAACTTCTTTCACCAAGATAACAACAACAGCAACCCTTTCTTCCATCCCTCTTCTTTCCCTTCATCCATGTCCTTCATCACCAACCTTCAACACTACCCTCATCAGGCCACTCCAAAACCCATATTTTCTTCTCTTCTAAGTGGCATGATGATCCCTAGCAGCACCACCAATAACCCTTTGTATGATCAAAATGGTGGAAATAATAATAGTTGCCAACAGGTGATGGGGTTTCTTGAACCTCAAGCTTTCGCTACCTCTTCATCAAACGTAGATGCTACTCTCTTGGGGGGTTTAGGATTTCCAACAAGTTTGAACAACTCATCATCAGACCCCAATAATAATAGCTTATCAGCAACCATGAGCTGTGTAATCCCACAAGAACATGAAGAAGAAGATAAACCGCCCAATAATAAGTTTGGCCTCTTTGAGGGTTTTCACAATAACATTGAGAATAATACTGGTAGTAGTTCATCATCATGGATGATGAACAACAAGTACTCCAACATACTCATGAGACCTCTTGAATCTTTACCTCCATCATCAGGTGCACAACCAACACTCTTTCAGAAGAGAGCAGCACAACACAGGAAAATCAACGTCACAGATGAAAGAGGAAAGGGCAAACTTGATGAGGAGGAACAACAAGGGAATAATAATGAAGAAGAGAAAAGGAAGCTGGAGATGGAAGATACTGGAGATGGAAGTTTGTTAAACAGCTATGATGATTATTCTGATCATGACATGGTTGAGGATAGTATTGACAACAACAACAACATGATGAAGATGGAATCAGAGAGTAGTAGTAAAAACAAGAATATTATTGGTGAAAACAACAACAGAAACAGTAACAATAATCTCAATTTGCAGAAAGGGAATAATAACAAGAAGAAGACAGGGATGCCTGCTAAGAACTTGATGGCTGAACGCCGCAGAAGGAAGAAGCTCAATGACAGACTCTACATGCTCAGATCCGTTGTTCCTAATATCAGCAAAATGGACAGGGCTTCAATACTTGGGGATGCAATTGAATATATGAAAGAACTTCTGCAAAAGATTAATGACCTTCATAACGAATTGCAATCAATGCCTCCTACGGCACCTGCTTCAAGCTTGCATCATCCTTTGACACCAACTAATAATAATACTGCTACTCTACCGCCAGCAGCTGCTTCTCTTCCCAGCCGCATGATGATGAAGGAAACTGCTTCTTGCCCCACTTCTTCATTGCCAACTCCCAATGACCAGCCTGCCAGGGTTGAGGTTGGGTTGCGTGAAGGAAGAGGAGTAAATATCCATATGTTTTGTGATCAGAAACCTGGTCTGTTGCTCTCAACACTCACCACTTTGGACAACCTTGGGTTAGATATCCAGCAGGCTGTTATCAGTTTCTTTAATGGCTTTGCTATGGACATTTTTCGAGCTGAGCAATGCAATGAAGGTCAGGATCTCCACCCAGATCAAATCAAAGCAGCACTCATTGAAGCATCTGAAGCATCCGGCTTCCATAACATCATTTAG 1722 0.4175 MSSTNSTCLMEERELSDANNTYELVPIPIMPPPQVVNEDWYMPNNNINNTVTTIQNQPPDSDSDTRDMNFFHQDNNNSNPFFHPSSFPSSMSFITNLQHYPHQATPKPIFSSLLSGMMIPSSTTNNPLYDQNGGNNNSCQQVMGFLEPQAFATSSSNVDATLLGGLGFPTSLNNSSSDPNNNSLSATMSCVIPQEHEEEDKPPNNKFGLFEGFHNNIENNTGSSSSSWMMNNKYSNILMRPLESLPPSSGAQPTLFQKRAAQHRKINVTDERGKGKLDEEEQQGNNNEEEKRKLEMEDTGDGSLLNSYDDYSDHDMVEDSIDNNNNMMKMESESSSKNKNIIGENNNRNSNNNLNLQKGNNNKKKTGMPAKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRASILGDAIEYMKELLQKINDLHNELQSMPPTAPASSLHHPLTPTNNNTATLPPAAASLPSRMMMKETASCPTSSLPTPNDQPARVEVGLREGRGVNIHMFCDQKPGLLLSTLTTLDNLGLDIQQAVISFFNGFAMDIFRAEQCNEGQDLHPDQIKAALIEASEASGFHNII* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2938 573 MobiDBLite consensus disorder prediction 257 315 - -
Ahy13g2938 573 Coils Coil 277 299 - -
Ahy13g2938 573 PANTHER BHLH TRANSCRIPTIONAL FACTOR 136 567 - -
Ahy13g2938 573 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 367 416 IPR011598 GO:0046983
Ahy13g2938 573 MobiDBLite consensus disorder prediction 263 299 - -
Ahy13g2938 573 Gene3D - 358 431 IPR036638 GO:0046983
Ahy13g2938 573 CDD bHLH_AtAMS_like 370 434 - -
Ahy13g2938 573 SMART finulus 373 422 IPR011598 GO:0046983
Ahy13g2938 573 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 370 439 IPR036638 GO:0046983
Ahy13g2938 573 Pfam Helix-loop-helix DNA-binding domain 374 416 IPR011598 GO:0046983
Ahy13g2938 573 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 136 567 - -
Ahy13g2938 573 MobiDBLite consensus disorder prediction 336 367 - -
Ahy13g2938 573 MobiDBLite consensus disorder prediction 429 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2938 Ahy-Chr13 118548949 118554133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2938 204 543 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 48.980 1.50e-78 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy13g2938 HLH 1.70E-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2938 - - ahf:112732910 973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2938 13 118548949 118554133 Ahy3g2599 3 116242220 116246511 hybridization
Ahy13g2938 13 118548949 118554133 Ahy18g2912 18 133991325 133996550 PCT
Ahy13g2938 13 118548949 118554133 Ahy8g2667 8 50007980 50012753 PCT
Ahy18g2912 18 133991325 133996550 Ahy13g2938 13 118548949 118554133 PCT
Ahy8g2667 8 50007980 50012753 Ahy13g2938 13 118548949 118554133 PCT