Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2921 ATGGGCTGCGCGCTCCCAAAGCCGGCGCGATCCCTACCAAATCCCGCTGCGCCTCCGGCCAGCAATGTTCGCGGCCACATTCCGACCCAACAGGGTTGGCCGCCGTGGTTGATGGAGGTTGTCGGCGACGCCATCCGAGACTGGACTCCTCGCCGCGCCAACACCTTCGAAAAGCTTGCTAAGATTGGGCAAGGGACTTATAGCAATGTGTACAAAGCGAGAGACCTAGTGAGTGGAAAGATAGTGGCTTTGAAGAAGGTGAGATTTGATGACTTAGAAGGAGAGAGTGTGAAGTTCATGGCCAGAGAGATTCTTGTCCTGAAGAAGCTTGATCACCCGAATGTTGTGAAACTTGAAGGCTTGGTTACTTCAAGGATCTGTTCCAGTATCTACTTGGTGTTTGAGTACATGGACCATGATCTTGCTGGCCTTGTTGCTGGCCATGGTCTCAACTTCACTCAGCCTCAGATTAAATGCTATATGAAGCAATTACTATGTGGGCTTGAGCATTGCCACAGCAGAGGTGTATTACACCGTGATATAAAGGGTTCCAATCTGCTTATTGACAATCAAGGAATCCTTAAAATTGCTGATTTTGGACTCGCCGCTTTCTATGATTCCAAACAAACCCGTCCCATGACCAACCGAGTCGTCACTCTTTGGTATCGTCCGCCGGAGCTTCTTCTTGGAGCTACCTTCTATGGTGTTGGTATCGACCTCTGGAGTGCCGGATGCATCTTTGCGGAGCTACTTGCCGGAAAGCCTATCATGCCTGCCCGAACAGAGGTTGAGCAACTGCACAAAATATTCAAGTTATGCGGCTCTCCATCAGAGGATTACTGGAAGAAATATAGATTGCAAAATGCTACACTCTATAAGCCACACCACCAATATAAAAGATGCATCCTGCAAACTTTCAAGGATTTCCCATCTTCTTCATTACCTCTAATTGATACTCTTCTTGCAATAGATCCCGATCATCGCGGCACTACCTCTGCAGCTCTAAATAGTCAATTCTTTAACACTGAGCCCTATGCTTGTGAACCATCAAGTTTACCAATGTATCCTCCCTGCAAAGAACTCGATGTAAAGCTAAGAGTCAAAGAAGCAACAAGGCAGAAAGCTCTAAGCGGAAAAGCTGTTGCAGTTGATGCTGCGACAAGAGTTAGAGCGCGTGAGTGCGCTTTGGCCATTCCAGAGAGCCAAACAAATTTAGATAGGTGGAGAGTTGTGACAAATGCAAATGCCAAAAGCAAGAGTGAGAAATTCCCACCTCCTCATCAGGATGAAGCTGTTGGATATCCATTGAATGCATCAAACAGAGGAACTGTTTTATTTGGTGCCAGTGACACTTCCTTTGGCTCAAAAACTTCAAGAACTCATGGAACTAGTATTGCTGCTGCTGCTAGGCCTAGGCCTAATTCCAAAGGAAGGACGTCAAACAAAGCAGATTCGAAGATGGTGTCATCTTGGAAATTTATGCGTGCATTCAAGCCAACAATTGTTGGCCTTTCATCTGATTTATTATTTAGAAGGAATTAA 1542 0.4617 MGCALPKPARSLPNPAAPPASNVRGHIPTQQGWPPWLMEVVGDAIRDWTPRRANTFEKLAKIGQGTYSNVYKARDLVSGKIVALKKVRFDDLEGESVKFMAREILVLKKLDHPNVVKLEGLVTSRICSSIYLVFEYMDHDLAGLVAGHGLNFTQPQIKCYMKQLLCGLEHCHSRGVLHRDIKGSNLLIDNQGILKIADFGLAAFYDSKQTRPMTNRVVTLWYRPPELLLGATFYGVGIDLWSAGCIFAELLAGKPIMPARTEVEQLHKIFKLCGSPSEDYWKKYRLQNATLYKPHHQYKRCILQTFKDFPSSSLPLIDTLLAIDPDHRGTTSAALNSQFFNTEPYACEPSSLPMYPPCKELDVKLRVKEATRQKALSGKAVAVDAATRVRARECALAIPESQTNLDRWRVVTNANAKSKSEKFPPPHQDEAVGYPLNASNRGTVLFGASDTSFGSKTSRTHGTSIAAAARPRPNSKGRTSNKADSKMVSSWKFMRAFKPTIVGLSSDLLFRRN* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2921 513 MobiDBLite consensus disorder prediction 450 483 - -
Ahy13g2921 513 CDD STKc_CDK9_like 56 340 - -
Ahy13g2921 513 SUPERFAMILY Protein kinase-like (PK-like) 49 345 IPR011009 -
Ahy13g2921 513 Pfam Protein kinase domain 56 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy13g2921 513 ProSiteProfiles Protein kinase domain profile. 56 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy13g2921 513 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 28 486 - -
Ahy13g2921 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Ahy13g2921 513 PANTHER CELL DIVISION PROTEIN KINASE 28 486 - -
Ahy13g2921 513 ProSitePatterns Protein kinases ATP-binding region signature. 62 85 IPR017441 GO:0005524
Ahy13g2921 513 SMART serkin_6 56 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy13g2921 513 MobiDBLite consensus disorder prediction 1 28 - -
Ahy13g2921 513 MobiDBLite consensus disorder prediction 450 464 - -
Ahy13g2921 513 Gene3D Phosphorylase Kinase; domain 1 42 138 - -
Ahy13g2921 513 Gene3D Transferase(Phosphotransferase) domain 1 139 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2921 Ahy-Chr13 117613183 117615748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2921 48 379 Core Cell Cycle Gene Families AT5G10270 50.575 1.01e-111 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Ahy13g2921 Pkinase 2.70E-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2921 K08819 - gmx:100789359 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2921 13 117613183 117615748 Ahy3g2582 3 115324949 115327536 hybridization