Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2897 ATGGATTGGAATTTGAAAGCACCACCGTCTTGGGATTTGACAGAAGTGGATGAGGCAACCTTACCAAACATAGAAACAGTGGATGGCTCAACCAGATTTGGTGTTTACAGAACAAAAGGAGGGGAATTCTCTGTTGACTTGAAACTTGGCCAGGTTGGGAATTCTGCAACCGAACCAGTGTTGGTGACTAATTCAAATAAGTCCAACAAAGATGCTGTTGCTGCTGGTGTTGGTGTTGGTGTTGGTGTTGGGGTGTCCAACTCCAAAATGGTAATGCAATCACCTTCCTCAGGGTCATCAAAGAGAGCTAGAGCCATTAACAATGGGACACAGACAGTGTCATGCCTCGTTGATGGGTGCAATTCAGATCTCAGCACTTGCAGAGACTATCACAGGCGCCATAAGGTCTGTGAACTCCATTCCAAGACTCCTCAGGTCACAATTGCTGGCCACAAACAAAGGTTCTGCCAACAGTGTAGCAGGTTTCATTCACTGGAGGAGTTTGATGAAGGAAAGAGAAGCTGCAGAAAACGCTTAGATGGACACAACCGAAGGAGGAGAAAGCCACAACCAGAACCAATCACAAGAGGTGGTAGTTTTTTGTCCAGTTTCCAAGGCAGCCAGTTGCTACCCTTCTCAGGTTCGCATGTGTTCCCCTCATCTGGCGTGGTGAATGCTGGGTGGAGTGCAGGACTTGTTACATCCTGCGGAGATGTCAGGCTCCACAGCCACAGCAGCCAGCAACAGCAACAGATGCACATGGTTGATAAACAAGACCTGTTCCTTGGATCCTCACCAACACCCTACAATAACAACAAAGAAGGGAAGCAACAACTTGCATTCTTACAAGTTGATAACCATCACCACCATCATGCTGGTGCTGCTTCTTCCATGTGCCTGAGGAACATGTTCTGTGATAACACCCTAACAAGCTCGGTTCATGACTCTTCCTGTGCTCTCTCTCTTCTGTCATCACCACAGACAACACACAATCCTGGGAATGGATTGAACCAATTGGTGCCGCAGCCTCACACTCATCATACTCATCACTCTTCCCTGATGCAACAATCCTTAGGCCTCAGCCTCCACGATAGCAGCAGCATGGAGTCGGTGGACCCGGTTATGGGCCACAGTGAGACTGAACATTGTTCCTCAATGTATAATATGGATTCTCATGGATCCCATGGGAGTGATCCCCCTCAACTATTCCCCTTTCAGTGGGAATAA 1227 0.4784 MDWNLKAPPSWDLTEVDEATLPNIETVDGSTRFGVYRTKGGEFSVDLKLGQVGNSATEPVLVTNSNKSNKDAVAAGVGVGVGVGVSNSKMVMQSPSSGSSKRARAINNGTQTVSCLVDGCNSDLSTCRDYHRRHKVCELHSKTPQVTIAGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPITRGGSFLSSFQGSQLLPFSGSHVFPSSGVVNAGWSAGLVTSCGDVRLHSHSSQQQQQMHMVDKQDLFLGSSPTPYNNNKEGKQQLAFLQVDNHHHHHAGAASSMCLRNMFCDNTLTSSVHDSSCALSLLSSPQTTHNPGNGLNQLVPQPHTHHTHHSSLMQQSLGLSLHDSSSMESVDPVMGHSETEHCSSMYNMDSHGSHGSDPPQLFPFQWE* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2897 408 MobiDBLite consensus disorder prediction 179 199 - -
Ahy13g2897 408 ProSiteProfiles Zinc finger SBP-type profile. 112 189 IPR004333 GO:0003677
Ahy13g2897 408 SUPERFAMILY SBT domain 113 194 IPR036893 GO:0003677|GO:0005634
Ahy13g2897 408 Gene3D - 106 176 IPR036893 GO:0003677|GO:0005634
Ahy13g2897 408 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 11 408 IPR044817 GO:0003677
Ahy13g2897 408 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 11 408 - -
Ahy13g2897 408 Pfam SBP domain 115 188 IPR004333 GO:0003677
Ahy13g2897 408 MobiDBLite consensus disorder prediction 326 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2897 Ahy-Chr13 115933754 115937615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2897 1 408 SBP-box Gene Family AT5G50670 40.749 6.10e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ahy13g2897 SBP 1.60E-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2897 - - ahf:112790946 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2897 13 115933754 115937615 Ahy3g2555 3 113289327 113293018 hybridization