Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2879 ATGTGGCGGTCGGCGATTTCAGAACGACGAAGGGCATTCTCGAAGCTTCTATTCGCCTTCACAGTGTCCCGCAACATGGGCGGCGGCCCTCGAACCTTCCCCGGCGGCGTCAACAAGTGGAAGTGGAAGCGCATGCACGAGAAGCGCGCCCGTGACAAAGAGAAGAGACTTCTCGAACATGAGAAACAGCTCTATCAGGCTCGCATTCGCTCCCACATACGCTCACACCTCGCACCCGACAACTCAACCGCCACCGCCGCCACCACCCACGGCCCTATCTCCCCCACTGACCACATTAGGGCCCTCGCCAACCGCTTCATGAAGGAAGGAGCTGAAGATCTCTGGAACAACGACGACGGTCCCCTAACCGCTTCTTCTTCTTCTTGTTCTTCTCCCACGCGGCAGCAAGGTTCGATTGAGGCGCCGGTGGATTTGCGGAAGCTGATACAAGAGAAACGGAACCCCAATTCAATGAATTCGAGTGGGAATTTCGGTCAGAGGAGGGGTTACCATTCTGTTTCTGAGGTGAATTCCGGTGTTGGTAGCAGTAAGAAACTTGCGCCTGCTGGGAGGAGAAGATTTTGGAGGAACGATAGTTCTTCTTCGAGTGAGAGTGAATCCGAGGATGAGAACGATTCGAGGGTTAATAATTGGGATGTTAGGAAGATGGGTAGTAGTGCTTCTTTGAGGAAGCATGATTTGAAGAGGGAGAGGAGAGTGATGCCAAAACCATATGATGAAGAGGCTGATTTTGCAGAACAGGTTGAGCTGATTAAGTATGAGATTAACAAGAGGAAGTTGAAACAGAAGGAAATGGAAGAGTACAGGGTTGAGGACCAAGAATCCATCCTAACCCAATCAAGATTTGATGAGTGCGGTATATCGCCATTGACAGTCAAGGCTCTCTCTTCAGCTGGTTATATCCACCTGACCCGGGTGCAAGAGGCAAGCCTTTCTGTTTGCCTTGAGGGTAAGGATGCTCTGGTCAAAGCTAAAACTGGCACGGGAAAAAGTGCAGCATTTTTGCTTCCTGCCATTGAAACAGTTTTGAAAGCTATGAATAGCAAGTCGCGTCAAAATGTGCCACCTATATTTGTTCTTATTCTCTGCCCTACCAGAGAACTTGCCAGTCAAATTGCTGCTGAAGCAAAGGCTTTGCTCAAGTATCAAGATGGCATTGGTGTACAAACTCTCGTAGGAGGGGTGCGATTTAAAGTTGACCAAAAGCGTCTTGAATCCGATCCATGCCAGATACTTGTTGCTACCCCTGGTAGGTTGCTAGATCATATTGAGAATAAGTCTGGACTATCTGTGCGATTGATGAGCTTGCAGATGCTTGTACTTGATGAAGCTGATCATTTACTGGACCTTGGATTTCGAAAGGACGTAGAAAAGATTGTTGACTGTGTGCCTCGTCAAAGGCAATCCTTGATGTTTTCTGCAACCATCCCAAAGGAGGTCCGCCGTGTATCTCAACTTGTTTTGAAAAGGGAACATGCATACATTGATACAGTTGGTATGGGTTGTCTGGAAACTCCAGTGAAGGTCAAGCAATTTTTTCTTATTGCTCCACAGGAATCACATTTTCAAATAGTACACCATATTTTAAAGGAGCATGTCATGCAAACACCAGATTATAAGGTTATTATTTTCTGTGTTGCTGGAATGGTAACATCACTTATGTATCAACTTCTCCGTGAAATGAAAATGAACGTCAGGGAGCTACACTCTCGAAAACCCCAACTGTATCGAACTCGCATATCAGATGAGTTTCGGGAATCCAAACAACTGATTCTTGTCTCATCTGATGTTTCATCTCGTGGAATGAATTATCCCAATGTTACTTTAGTCATACAGGTGGGTATTCCTTCTGATCGTGAACAATATATACATCGTCTTGGAAGAACTGGACGGGAAGGCAAAGAAGGGGAAGGCATATTGTTGATTGCTCCATGGGAAGAATATTTTTTAGATGAAATCAAGGATCTTCCTCTAGAGAGATTCCCTTTTCCAGATATAGATCCACAGACAAAGCTTAAGATAGAACATTCCATGGGAAAGATAGACAGTGACGTCAAAGAAGCCGCGTATCATGCTTGGCTGGGTTATTACAACTCAATTAGGGAAATTGGGAGGGAGAAGTCCACCATAGCTGAGCTTGCAAACCGGTTTTCTGCATCAATTGGTTTACAGAAGCCTCCTGCGCTCTTTCGAAAGACTGCTTTAAAGATGGGTTTGAAAGACATTCCTGGCATTAGAATTCGTAGATAA 2271 0.4579 MWRSAISERRRAFSKLLFAFTVSRNMGGGPRTFPGGVNKWKWKRMHEKRARDKEKRLLEHEKQLYQARIRSHIRSHLAPDNSTATAATTHGPISPTDHIRALANRFMKEGAEDLWNNDDGPLTASSSSCSSPTRQQGSIEAPVDLRKLIQEKRNPNSMNSSGNFGQRRGYHSVSEVNSGVGSSKKLAPAGRRRFWRNDSSSSSESESEDENDSRVNNWDVRKMGSSASLRKHDLKRERRVMPKPYDEEADFAEQVELIKYEINKRKLKQKEMEEYRVEDQESILTQSRFDECGISPLTVKALSSAGYIHLTRVQEASLSVCLEGKDALVKAKTGTGKSAAFLLPAIETVLKAMNSKSRQNVPPIFVLILCPTRELASQIAAEAKALLKYQDGIGVQTLVGGVRFKVDQKRLESDPCQILVATPGRLLDHIENKSGLSVRLMSLQMLVLDEADHLLDLGFRKDVEKIVDCVPRQRQSLMFSATIPKEVRRVSQLVLKREHAYIDTVGMGCLETPVKVKQFFLIAPQESHFQIVHHILKEHVMQTPDYKVIIFCVAGMVTSLMYQLLREMKMNVRELHSRKPQLYRTRISDEFRESKQLILVSSDVSSRGMNYPNVTLVIQVGIPSDREQYIHRLGRTGREGKEGEGILLIAPWEEYFLDEIKDLPLERFPFPDIDPQTKLKIEHSMGKIDSDVKEAAYHAWLGYYNSIREIGREKSTIAELANRFSASIGLQKPPALFRKTALKMGLKDIPGIRIRR* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2879 756 Pfam Helicase conserved C-terminal domain 535 639 IPR001650 -
Ahy13g2879 756 SMART ultradead3 306 519 IPR014001 -
Ahy13g2879 756 PANTHER RNA HELICASE 29 755 - -
Ahy13g2879 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 657 IPR027417 -
Ahy13g2879 756 MobiDBLite consensus disorder prediction 152 181 - -
Ahy13g2879 756 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 318 501 IPR014001 -
Ahy13g2879 756 Gene3D - 511 739 IPR027417 -
Ahy13g2879 756 SMART helicmild6 559 640 IPR001650 -
Ahy13g2879 756 MobiDBLite consensus disorder prediction 197 217 - -
Ahy13g2879 756 MobiDBLite consensus disorder prediction 119 138 - -
Ahy13g2879 756 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 535 681 IPR001650 -
Ahy13g2879 756 MobiDBLite consensus disorder prediction 112 220 - -
Ahy13g2879 756 Gene3D - 253 502 IPR027417 -
Ahy13g2879 756 Coils Coil 43 63 - -
Ahy13g2879 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 471 IPR027417 -
Ahy13g2879 756 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 287 315 IPR014014 GO:0003724
Ahy13g2879 756 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 29 755 - -
Ahy13g2879 756 CDD SF2_C_DEAD 516 649 - -
Ahy13g2879 756 Pfam DEAD/DEAH box helicase 311 489 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2879 Ahy-Chr13 115351785 115355454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2879 278 665 Eukaryotic Initiation Factors Gene Family AT3G19760 26.420 3.08e-43 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2879 - - lang:109349967 1150.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2879 13 115351785 115355454 Ahy3g2542 3 112802208 112806197 hybridization