Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2831 ATGTTGACGGAGAACTTCAAAGAACAGTTTGCTTTGTCTGTGAGAAGCATCCAGTGGAGCTATGCAATATTCTGGTCTACTTCATCTACCCAACCCGGCAGGGTGTTGAGTTGGGGGGAAGGATATTACAATGGAGACATTAAGACAAGGAAGACAAGTCAAGGAGTGGAACTCAATTCTGATCAGATAGGGTTGCAGCGGAGTGAGCAGCTTCGAGAGTTATACAAGTCCCTCAAAACTGTAGAAGCCAGCCCTCAAACAAAAAGGCCTTCAGCAGCACTGTCTCCAGAGGATCTCACAGATACAGAATGGTACTATTTGGTTTGCATGTCCTTTGTATTCAACATTGGCCAAGGGTTACCAGGAAAGGCTCTTGCAAAAGGTGAACCAATTTGGCTGTGTGATGCTCCTTCTAGTGATTGTAGAGATTTTAGTCGCTGTCTTCTGGCTAAGAGTGCATCCATTCAGACAGTGGTGTGCTTTCCTTTTATGGATGGGGTCATTGAGCTGGGTACAACTGATCATGTCTCAGAAGATCTCAGTCTCATTCAACAGATCAGAACTTCCTTCTTGGATATTCTTGATGTCGGTGTTCATAATGTACATGGAGCATTTAATGTGAAACAATCTCAAGAAGTAGGAGGTGCATTAATCAGCATAACTTCTCCTAATAACAGTTCAAATGCATTTCAAGCCAATCAACCACCAGATGAAACACTCATGGTTGAAAGGATAAATAATGGCACCTCTCAAGTCCAAAGTTGGCAAATTATGGATGATGAATTGAGCAATGCTGTTCATAATTCTAGTGACTGCGTATCTCAAACTCTTCACAGTCCTGAGAACGTTGCTTCCCTTCCAAAGGGTGAAAACCTCACTGATAGTGCCAAAGACCTTCAAAAGTGCAATAACTCAAAAATGACATTAGTTGATCCTCGAAGCGATGATTGGCATTATCAGATGGTTCTTTCTACCCTTCTAAAAAGCTCAGACCAGTTAATCATGGGGATGCATTTTCAAAATTTTCATCAGGAATCAAGCTTTTCAAGTTGGAAGAAAGCTGGGTCAGTGAGCTACCAAAGGCCAAGAACTGGAGGAAGCTCACAAGCTTTATTGAAGAAGGTATTGTTTGAAGTTCCTCGGATGCACTTGGATGGGATACTTGAGTATCAAGAAGAGAATGACTTTAAAGAAGCAGTGAGAACAGAAGCTGATGAAAATGGCATGAACCATGTTTTGTCAGAGAGAAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGATCAATGGTCCCTTCAATTACTAAGGATGACAAAGTTTCGATACTAGATGATGCAATAGAATACCTTAGAAAGCTTGAAAAAAGGATAAAAGAGTTGGAAGCTCATAAGGATCTAACAGACAGAGAGGCTAGAACTAAAAGATCACCTCAAGATATGGTGGAGAGGACTTCTGATAATTATTTTAACAAAACGGATAATGGCACTAAATCGATGGCGAAAAAGAGGAAGTCTCGTGACATAGATGACACCAGGCCAGAGATTAATTCAGAATCTTTACTAAAAGGAAGTTCTACTAATGATGTTGCTGTTAACATCAATGAGAATAATGAAGTTGTGATTGAAATGAAATGCCCTTCAAGAGCAGGAATGTTTCTAAAAATTATGGAAGCAGTTAGCAGTCTCAGATTGAATTTTCATTCGGTTCAGTCCAGCGAAGTTGATGGGAAACTTTATTTTACCCTTATATCTAAGCTCACAGAGCCAACTATTGTATCAGCAAAAAGGATCAAACAAACACTACAAAATGTGGCTTTCAAGTGTTGA 1833 0.4004 MLTENFKEQFALSVRSIQWSYAIFWSTSSTQPGRVLSWGEGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELYKSLKTVEASPQTKRPSAALSPEDLTDTEWYYLVCMSFVFNIGQGLPGKALAKGEPIWLCDAPSSDCRDFSRCLLAKSASIQTVVCFPFMDGVIELGTTDHVSEDLSLIQQIRTSFLDILDVGVHNVHGAFNVKQSQEVGGALISITSPNNSSNAFQANQPPDETLMVERINNGTSQVQSWQIMDDELSNAVHNSSDCVSQTLHSPENVASLPKGENLTDSAKDLQKCNNSKMTLVDPRSDDWHYQMVLSTLLKSSDQLIMGMHFQNFHQESSFSSWKKAGSVSYQRPRTGGSSQALLKKVLFEVPRMHLDGILEYQEENDFKEAVRTEADENGMNHVLSERRRRAKLNERFLTLRSMVPSITKDDKVSILDDAIEYLRKLEKRIKELEAHKDLTDREARTKRSPQDMVERTSDNYFNKTDNGTKSMAKKRKSRDIDDTRPEINSESLLKGSSTNDVAVNINENNEVVIEMKCPSRAGMFLKIMEAVSSLRLNFHSVQSSEVDGKLYFTLISKLTEPTIVSAKRIKQTLQNVAFKC* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2831 610 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 406 455 IPR011598 GO:0046983
Ahy13g2831 610 MobiDBLite consensus disorder prediction 470 523 - -
Ahy13g2831 610 Pfam Helix-loop-helix DNA-binding domain 410 456 IPR011598 GO:0046983
Ahy13g2831 610 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 190 IPR025610 -
Ahy13g2831 610 Gene3D - 102 172 IPR029016 -
Ahy13g2831 610 PANTHER TRANSCRIPTION FACTOR TT8 5 606 - -
Ahy13g2831 610 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 409 472 IPR036638 GO:0046983
Ahy13g2831 610 MobiDBLite consensus disorder prediction 498 518 - -
Ahy13g2831 610 Gene3D - 398 473 IPR036638 GO:0046983
Ahy13g2831 610 Coils Coil 445 472 - -
Ahy13g2831 610 PANTHER TRANSCRIPTION FACTOR EGL1 5 606 - -
Ahy13g2831 610 SMART finulus 412 461 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2831 Ahy-Chr13 112845763 112849626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2831 4 610 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 47.149 4.81e-179 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy13g2831 bHLH-MYC_N 7.40E-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2831 - - ahf:112732736 1198.34