Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2828 ATGGAAAACAGGGAGGAAGATGTGAAGGTAGGAGCAAGCAAGTTCAGAGAGAGGCAGGCAATAGGGACAGCAGCACAAACAGAGAGAGACTACAAGGAGGCACCAGCAGCACCATTGTTTGAGGCAGGTGAGCTCAAGTCATGGTCGTTCTACAGAGCAGGCATTGCTGAGTTTGTGGCCACTTTCTTGTTCCTCTACATCACGGTCTTGACTGTAATGGGTGTCAAGAGGGAGCCCTCCATGTGCTCCTCTGTTGGAATCCAGGGTATTGCTTGGGCCTTTGGTGGCATGATCTTCGCCCTTGTCTACTGCACTGCTGGAATCTCAGGTGGACACATAAACCCAGCAGTCACCTTTGGACTCTTTTTGGCAAGGAAGTTGTCCCTCACAAGGGCAATATTCTACATAGTCATGCAGTGTCTTGGAGCTATATGTGGTGCTGGTGTAGTGAAGGGATTTGAGGGTAATGCTCGCTATGAGATTTTAAAAGGAGGAGCCAATATGGTCAACCATGGTTACACCAAGGGTGATGGCCTTGGAGCTGAGATTGTTGGCACCTTCGTCCTTGTCTACACCGTTTTCTCTGCTACTGATGCCAAGAGAAACGCTAGGGACTCTCATGTCCCTGTTTTGGCCCCTCTCCCCATTGGCTTTGCTGTGTTCTTGGTCCACTTGGCTACCATTCCCATCACAGGAACTGGCATTAACCCAGCAAGGAGTCTCGGAGCTGCCATTATCTACAACAGGGACGAAGCGTGGGATGACCATTGGGTTTTCTGGGTTGGACCTTTCATAGGAGCTGCTCTTGCTGCCGTGTATCACCAGATAGTGATCCGAGCCATTCCGTTCAAGACAAGGGCTTAA 864 0.5023 MENREEDVKVGASKFRERQAIGTAAQTERDYKEAPAAPLFEAGELKSWSFYRAGIAEFVATFLFLYITVLTVMGVKREPSMCSSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFEGNARYEILKGGANMVNHGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPVLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDEAWDDHWVFWVGPFIGAALAAVYHQIVIRAIPFKTRA* 288
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2828 287 SUPERFAMILY Aquaporin-like 44 279 IPR023271 -
Ahy13g2828 287 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Ahy13g2828 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 286 IPR034294 -
Ahy13g2828 287 PRINTS Major intrinsic protein family signature 257 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g2828 287 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g2828 287 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g2828 287 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g2828 287 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g2828 287 PRINTS Major intrinsic protein family signature 217 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g2828 287 PANTHER AQUAPORIN PIP1-5-RELATED 1 286 - -
Ahy13g2828 287 TIGRFAM MIP: MIP family channel proteins 56 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g2828 287 Gene3D Glycerol uptake facilitator protein. 37 285 IPR023271 -
Ahy13g2828 287 CDD MIP 52 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g2828 287 Pfam Major intrinsic protein 44 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ahy13g2828 Ahy-Chr13 112553345 112554703 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2828 1 286 Major Intrinsic Protein MIP AT4G23400 86.760 4.54e-179 493
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2828 K09872 - gmx:100796833 537.724
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2828 13 112553345 112554703 Ahy13g2828 13 112553345 112554703 ECH
Ahy13g2828 13 112553345 112554703 Ahy3g2500 3 109601323 109602687 hybridization