Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2815 ATGGCAGGATGGTCAACTTGGTCAAATGGGTCGTCCTTAGATTTCAATGAAGTTGAGATATTTGATGTATGTAATGGTAATGACTGTAGGAATCTAAACGATCACAGTGATAATGATGACCATGACAAAGTTAAAACCTTGTTTGATGAAGTTTTTCCGGTTTATCTAAAGGAGAGTTGTTCTCGTGGCATTGTTCGGCCTATGCCGGTTTTGCTGGGTGATGGACAAGCAGTGGATTTGTACAAACTCTTCTCTCTTGTGAAGGAAATAGGTGGATATGATTTTGTGTCAAGAAAAGGATTGTGGGGTTATGTGTCAAAGGAAATGGGTTTGAACCACCAAGTTTTGGCATCGATGAAATTAATTTTTGATAAGTATCTGAATGAGTTTGAAGAATGGCTCAGGAAGACTTTCAAAGAGAAGAGTTTCAGAAACGAAAATCATGGGCGTGATTGGGGTTTTAAGTCATTGCTGTTAGAGCTAGAGAAAGAATTGAGAGGCCTATTATCTCTAAACGTAAAGGATAAAGATGACGGGCTTGCAAAGATGGAATCAAATGGAATAAAAGAATATATTGATTTGGTTAACCACAAGGAAGATCCAAATGTATTGGACACCAAAACTCAGAAAATAAATACATATGAGGATGTCCAACACTCCCATGTTGATGATGACGAAAAAGCTTGTAATGGTGTTAAGGAATACTCTGTCACCTTGAACGCGTCAATTGCTGAGAATGGAGTTGGCTCTCGCAAGCGCAAACGGGAACCATTATCTGGAATGCTGAACTGGGTTAGGCAAGTTGCAAAGCATCCCTTTGTTCCTTTACAGCAACCATTACCAAAACCATCAAAGTGGAAGGAGTATAAAGGCAATGACTTTTTCATCCAGTTACTGAGGGCAAGAGAGGCTCGGTTGGTGAAACCATGCGCACAACCTAACAATGAAACACCTTCTTCACAGAAGCAGAAGATGTGCCCTGATATGTACGAGGATCACGTTGCACCTCGTTACCATTCTTCTCCAAGACTGAGATGTAGTGAAAGGCTGCCAGCACATGTTAAATCTCGCACATGCTCTTGTTGCAATTCAGGTTCTGCCAATGGGAAAAAATTAACAAGTTCAGTCAATACAGAGGCCGAAAATTGTTTCTTGCATAAAACAACTGCAACAGTAGATTCATCGACTGCAAGGACAGTGATTGAACAGTCTGCAAATGATTTCCAGGAAAAGCATGTTTCTGTGGGTCCTCTTTATCAAGCAGATGTCCCAGAATGGACAGGTGAAGTTTGTGAGAGTGACTCAAAGTGGTTAGGCACTCGAGTATGGCCTCAGAAACATGACTTAGATCTTCCAAGTGAAACGGATCTTGTAGGGAGAGGAAGACAAGGCAATTGTGAGTGCCATTTTAAAGGTTCTGTTGAGTGTGTTAGATTTCATATTGCTGAAAGAAGGATGAAATTGAGGCGTGACCTGGGTTCTGCATTTTATCATTGGGGGTTCGATCGCATGGGTGAGGAAATTTCACTTCAATGGACAATCGAAGATGAAAAGAGATTCAAGGATTTGATGAGTCAGAGTTTTCCATCTCAAAACAAGTGTTTCTGGAGCAACAAATCAAGATACTTTCCAGACAAGACAAGAAGGGACTTGGTGAGTTATTACTTTAATATGTATCTTATTCAACTAAGAAGCTATCAGAACCGTGTGACTCCAAATAGTGTTGATAGTGATGAAGATGAAGTGGAGTTCGGATCTTTTAGCGAAGGTTTTGGGATGGGAGCTCTCAAAATCCCAGGTTCCAATTTCCTGGAGTGTTCACTGAATAAGCAATGCACTGATTTAGATTAA 1851 0.4052 MAGWSTWSNGSSLDFNEVEIFDVCNGNDCRNLNDHSDNDDHDKVKTLFDEVFPVYLKESCSRGIVRPMPVLLGDGQAVDLYKLFSLVKEIGGYDFVSRKGLWGYVSKEMGLNHQVLASMKLIFDKYLNEFEEWLRKTFKEKSFRNENHGRDWGFKSLLLELEKELRGLLSLNVKDKDDGLAKMESNGIKEYIDLVNHKEDPNVLDTKTQKINTYEDVQHSHVDDDEKACNGVKEYSVTLNASIAENGVGSRKRKREPLSGMLNWVRQVAKHPFVPLQQPLPKPSKWKEYKGNDFFIQLLRAREARLVKPCAQPNNETPSSQKQKMCPDMYEDHVAPRYHSSPRLRCSERLPAHVKSRTCSCCNSGSANGKKLTSSVNTEAENCFLHKTTATVDSSTARTVIEQSANDFQEKHVSVGPLYQADVPEWTGEVCESDSKWLGTRVWPQKHDLDLPSETDLVGRGRQGNCECHFKGSVECVRFHIAERRMKLRRDLGSAFYHWGFDRMGEEISLQWTIEDEKRFKDLMSQSFPSQNKCFWSNKSRYFPDKTRRDLVSYYFNMYLIQLRSYQNRVTPNSVDSDEDEVEFGSFSEGFGMGALKIPGSNFLECSLNKQCTDLD* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2815 616 SMART bright_3 43 136 IPR001606 GO:0003677
Ahy13g2815 616 Pfam ARID/BRIGHT DNA binding domain 56 131 IPR001606 GO:0003677
Ahy13g2815 616 SUPERFAMILY ARID-like 47 136 IPR036431 GO:0003677
Ahy13g2815 616 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 616 - -
Ahy13g2815 616 CDD ARID 45 131 - -
Ahy13g2815 616 Gene3D - 28 145 IPR036431 GO:0003677
Ahy13g2815 616 ProSiteProfiles ARID domain profile. 42 135 IPR001606 GO:0003677
Ahy13g2815 616 ProSiteProfiles ELM2 domain profile. 411 457 IPR000949 -
Ahy13g2815 616 SMART ARID_2 39 131 - -
Ahy13g2815 616 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2815 Ahy-Chr13 111389651 111393905 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ahy13g2815 ARID 4.10E-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2815 - - gmx:100819320 717.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2815 13 111389651 111393905 Ahy13g2815 13 111389651 111393905 ECH
Ahy13g2815 13 111389651 111393905 Ahy19g0201 19 2076782 2080050 ECH
Ahy13g2815 13 111389651 111393905 Ahy14g2430 14 128799377 128801436 ECH
Ahy13g2815 13 111389651 111393905 Ahy3g2488 3 108728226 108732480 hybridization