Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2813 ATGGGCGGTTGTTGCTGTTGTTGTTCTCCCAAAGTGACCGAATTGAGCGCTCCAACTGCATACTACTATTACCCAAGAGCATCAGAGGAGCATGTTCCACTTTCATCTCACCCGGGTGCTGCGTCTGCTTTCTCTGGGCGACTCTTAGTTGATACTAATCTAGATACTTCAAGCCCCGATACTTACAGACCACCTCCTGCTCCTATTCCCTTCAATGTCACCTTAGGTACCACTCACACACCATCTGTGGCTCAAGAAATTGTTGGAGACAAGAGTAATGCTTCCTTACAATCTACGAATTCTAATTCGATTCAAGAACCAGTTGCTGGAGATAATCATGGGACCTCAACTAAATTGGAAGAGCTGAAAGAATCAGAAGGCAGAGCTCAGACTGATTTAGAACTCGAGTCAACTAAGGATTCTGAGATTGAACTTCCAAAGTTGAGAAAACCTATAAATTTAGCTGAAGAGGAGGATTCGTGCCCAATTTGTTTAGAAGAGTATGATACAGAAAATCCAAAACTCACCACCAAATGTGACCATCATTTTCACCTTGCATGCATCCTGGAGTGGATGGAAAGAAGTGAAACTTGCCCTGTGTGTGATCAGGAAATGGTTTTCAACCCTCCCATTGAATAA 639 0.4335 MGGCCCCCSPKVTELSAPTAYYYYPRASEEHVPLSSHPGAASAFSGRLLVDTNLDTSSPDTYRPPPAPIPFNVTLGTTHTPSVAQEIVGDKSNASLQSTNSNSIQEPVAGDNHGTSTKLEELKESEGRAQTDLELESTKDSEIELPKLRKPINLAEEEDSCPICLEEYDTENPKLTTKCDHHFHLACILEWMERSETCPVCDQEMVFNPPIE* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2813 212 Pfam Ring finger domain 159 201 IPR001841 -
Ahy13g2813 212 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Ahy13g2813 212 SMART ring_2 161 201 IPR001841 -
Ahy13g2813 212 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 212 - -
Ahy13g2813 212 MobiDBLite consensus disorder prediction 94 140 - -
Ahy13g2813 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 207 IPR013083 -
Ahy13g2813 212 MobiDBLite consensus disorder prediction 94 112 - -
Ahy13g2813 212 MobiDBLite consensus disorder prediction 116 140 - -
Ahy13g2813 212 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 212 - -
Ahy13g2813 212 SUPERFAMILY RING/U-box 154 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2813 Ahy-Chr13 111224979 111227779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2813 1 208 C3H Transcription Factor Family AT5G41350 55.660 9.18e-74 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2813 - - gmx:100816369 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2813 13 111224979 111227779 Ahy13g2813 13 111224979 111227779 ECH
Ahy13g2813 13 111224979 111227779 Ahy3g2487 3 108673145 108675914 hybridization