Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2811 ATGTCTTCTGGTCTGTATTCATTTGAAACCACTTTCCAAGCACATTCAAGCTCAGACATGGTCACTGCTGATGGAGGAGACCTTGCTTTTCTCACTGACCCTTTTCCTTTCTTCGAAAACAGCACTACTAATGATATTGGTCAACACTGTTCGAGCAACCAAAGCATGTTCGATGAGGCTCTTTCTTCTTCTTCTGTTGACCCTTTTTCATCTTGCTTCTTTTCTTTCTCTCCTCCAAGTACGCACTTAGAAAACCTTAGCCTTCAGGCCAACAACAAGAACAACCGTGTTGATCCCAATTTGGAGAGTGACTTTGCAAGTTTCTCATCGGGTTTTGATGTGACACAAGTAGTGAAGAGCGAGGAGTGCCAAATCGCTGTTGAATTTGATTATGGATATAATAATCATAATCACCAACACTTTTTTCCCCACAGTTATAGCGGTGCTGAGAATGTGGCAAAATACATGCAGAGGAGTTTCAGCAGCAACTCCTTTCATGGCAAACCTGGGAATTTTCTGTTCCAAAATAATCACTCTGACACACTAAACAACAATAATAATAATAACAACATGGAATCTCCAAGTTTTCAAAGACATGATATGAGTTCACCTGAAAACAGTGCCTTCAATGGACAAATGAGGAGGGTGTGCAGCACTGGAGATCTGCAGAAGTGTCAAAGGGAAGGATCATTGTTGGAGGAACCGAATTTCAAAGTAGGGCGTTATAGTGCTGAAGAAAGAAAAGAAAGAATATCAAAATATAGAGCCAAGAGAAGCCAGAGGAACTTCAACAAAACCATCAAGTATGCATGCCGAAAAACACTAGCCGACAATCGACCGCGCATACGTGGCAGATTCGCACGCAACGACGAGGAGCGCGACATTATTCCTATTCCAAATCACAACGCTCCATGTTCAGCCCGAGATGATGAAGACGAAGAAGTCGATTTCTGGATTGAAGGGTTGCAGTTGCATGAAGAGCAGGAGGATGTAACAGTCAACGCTTATGGACCTAATCAGTTTCAGTACTTTCGTTTCTAA 1041 0.4227 MSSGLYSFETTFQAHSSSDMVTADGGDLAFLTDPFPFFENSTTNDIGQHCSSNQSMFDEALSSSSVDPFSSCFFSFSPPSTHLENLSLQANNKNNRVDPNLESDFASFSSGFDVTQVVKSEECQIAVEFDYGYNNHNHQHFFPHSYSGAENVAKYMQRSFSSNSFHGKPGNFLFQNNHSDTLNNNNNNNNMESPSFQRHDMSSPENSAFNGQMRRVCSTGDLQKCQREGSLLEEPNFKVGRYSAEERKERISKYRAKRSQRNFNKTIKYACRKTLADNRPRIRGRFARNDEERDIIPIPNHNAPCSARDDEDEEVDFWIEGLQLHEEQEDVTVNAYGPNQFQYFRF* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2811 346 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 24 343 IPR045281 GO:0009909
Ahy13g2811 346 ProSiteProfiles CCT domain profile. 247 289 IPR010402 GO:0005515
Ahy13g2811 346 MobiDBLite consensus disorder prediction 186 206 - -
Ahy13g2811 346 Pfam CCT motif 247 289 IPR010402 GO:0005515
Ahy13g2811 346 PANTHER CCT MOTIF FAMILY PROTEIN 24 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2811 Ahy-Chr13 111038079 111040299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2811 243 291 C2C2-CO-like Transcription Factor Family AT5G57660 53.061 1.26e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ahy13g2811 CCT 9.20E-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2811 - - adu:107479916 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2811 13 111038079 111040299 Ahy13g2811 13 111038079 111040299 ECH
Ahy13g2811 13 111038079 111040299 Ahy3g2485 3 108502857 108504817 hybridization
Ahy5g1581 5 41804401 41806341 Ahy13g2811 13 111038079 111040299 PCT