Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2808 ATGGGATTCCCAGTGGGTTACACAGAGCTTCTGTTCCCAAAGCCTGTTCTTCAAATCCTCTCCGTATTGGGTTACATAAGAAGGTTGATTTTCACCTTCTTCAGCTACACGGGCCTCCCCAACTTCCTCGAACCCGATGACACCGATAACACAATGCCCCAATTCCACCCCGTGTCGGAGCTCCTCATCAGAGAGATCCTTCCCGTGGTGAAGTTCTCGGAGCTGGTGGAGCCGCCTGAGAGGTGTGCCGTGTGCCTCACGGACTTCGAGCAGGAGGATGAGATCCGACGGCTGGTGAACTGCACGCACGTGTTCCACCGGGGTTGTGTGGACCGTTGGATGGGTTACGATCAGAGCACGTGCCCTCTGTGCCGGACACCCTTCATTCCAGATGATTTCTTCAATCACGGCCTCTGGGCTGCTTCTGCCATTCCCGAATTTCATGCTTAG 450 0.5489 MGFPVGYTELLFPKPVLQILSVLGYIRRLIFTFFSYTGLPNFLEPDDTDNTMPQFHPVSELLIREILPVVKFSELVEPPERCAVCLTDFEQEDEIRRLVNCTHVFHRGCVDRWMGYDQSTCPLCRTPFIPDDFFNHGLWAASAIPEFHA* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2808 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 131 IPR013083 -
Ahy13g2808 149 PANTHER BRH1 RING FINGER PROTEIN 1 148 - -
Ahy13g2808 149 Pfam Ring finger domain 81 125 IPR001841 -
Ahy13g2808 149 ProSiteProfiles Zinc finger RING-type profile. 82 125 IPR001841 -
Ahy13g2808 149 SMART ring_2 82 124 IPR001841 -
Ahy13g2808 149 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 148 - -
Ahy13g2808 149 SUPERFAMILY RING/U-box 62 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2808 Ahy-Chr13 110998495 110999331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2808 1 143 C3H Transcription Factor Family AT1G63840 55.844 4.12e-53 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2808 K16281 - jre:109014495 222.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2808 13 110998495 110999331 Ahy13g2808 13 110998495 110999331 ECH
Ahy13g2808 13 110998495 110999331 Ahy3g2484 3 108493848 108494663 hybridization
Ahy5g1579 5 41770281 41771201 Ahy13g2808 13 110998495 110999331 PCT