Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2775 ATGGCCGAGCACGTTGATTACCTACTTGACTTGAATCCAACAAAAATTACTTGGAATTTCAAAGTTTATGTTATTAGGATCTGGGAAGTCCCAAGCAAGTATAATGAGAAGGAGGTTGGAAGCATTCAAATGATTCTTCAGGATAGTAAGGGCGATAGGATGCACGCTAAAATCCCCAGGTCTTTGATCAGCAAGTGGAAGGGTTCTATTGTGCAGTTTCAGAATTACCAAATGACCCACTTCATTGTTGTTGCTAATGATATGGACACAATCATAACTCCGAGCAAATGGATACTTTGCTTCTCTCACAGAACACGAGTCATCCATGTGGAGAATCCATACTTCCCATTAGAAGCCTTCTATTTCAAACCTATACCAGATTTACTGAATGCTGATAAGGCCAACAGAATAAACTGCATTCTATTCGGGAACATGGTGGACCAGATTCTTCCACAACTTGAAGATGGAAGGGTGGAACCCCTTATAGTTTTGTTTCAATACTTCAGAGCAATAAGGTGGAATGGAAAGACCTCTATTCAAAGCAACTTTGATGTGTCTCAAATGCACTTTGACAACAACTTAAAAGAGATCATGGAGTTTCAGAAAAGGGTTGCAAAATATTTAATGCTGCTTAGTGTGTCACCATCAAGTTCTGTGAGGATTACTCAAGTGCCTTCACAACATGCATGGTCAGGAGCTGATGAACTTAATCAAGGGTCTGTTTTTGTAAAGGCAATCGAAGAAGCACTTGGCTTGGTTCAGGAAGGTCCTTGTTGGATATCTGCAACCATTGTGGCTATAAATGCCACGAACAAGGATTGGTTCTACAAGACATGTAGGAGGTGCCCAAAAAAAGTAGAATCAAGTATTGGTAATAGATACGAGTGTAACAAATGTGGCCATACTCATGGTTGTGCAGCTTTGAGGTTCAAGGTGGAGGTCATGGTATATGATAGCACTGGAAGTATAAGTTTGCTTCTATGGGACAGAGAAATCACTCAGTTGTGTGATAAGCGAGAAGAACAAGTGATGGAGGAGGATGAAATAGGTGATGATGAATATCCCCCTATCCTTGATAATATGATGGACAAAAGGGTGCTATTTAAGATTAATGTAAAATCTGCAAACATTAATCATAGAGATCAAGTCTACACTGTCATGAAAGTGTGTGATGATGATGAGATAATTCAGAAGAATCTTCCAAAAAAGATGCAATCTAATCAGTCTATTAGTATTATAGAAATTAACTGCAGCAACTCGGTTGATATGTTTGAAAATATTATTCACCTTAATGTTGATGCTGATCCTCAGTTTTCTGATATTTTGGATGAGTGTGTTTCCTCCCTCAAACACAAGACCTCATCTAAAAGAGCTTCCAGTGGGATGAAGTATGGGTTTAATAGTGCAATTGATAATAATGATGATGGACAATTTTCAACCAATAAGTTTAGTAGAAAGTATAGAAAAGGACAGAAGATTCAAGTGATTGAAGGGGATGAGTGA 1503 0.3846 MAEHVDYLLDLNPTKITWNFKVYVIRIWEVPSKYNEKEVGSIQMILQDSKGDRMHAKIPRSLISKWKGSIVQFQNYQMTHFIVVANDMDTIITPSKWILCFSHRTRVIHVENPYFPLEAFYFKPIPDLLNADKANRINCILFGNMVDQILPQLEDGRVEPLIVLFQYFRAIRWNGKTSIQSNFDVSQMHFDNNLKEIMEFQKRVAKYLMLLSVSPSSSVRITQVPSQHAWSGADELNQGSVFVKAIEEALGLVQEGPCWISATIVAINATNKDWFYKTCRRCPKKVESSIGNRYECNKCGHTHGCAALRFKVEVMVYDSTGSISLLLWDREITQLCDKREEQVMEEDEIGDDEYPPILDNMMDKRVLFKINVKSANINHRDQVYTVMKVCDDDEIIQKNLPKKMQSNQSISIIEINCSNSVDMFENIIHLNVDADPQFSDILDECVSSLKHKTSSKRASSGMKYGFNSAIDNNDDGQFSTNKFSRKYRKGQKIQVIEGDE* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2775 500 CDD RPA1_DBD_A_like 21 107 - -
Ahy13g2775 500 Pfam Domain of unknown function DUF223 44 111 IPR003871 -
Ahy13g2775 500 Gene3D - 116 208 IPR012340 -
Ahy13g2775 500 Gene3D - 5 109 IPR012340 -
Ahy13g2775 500 SUPERFAMILY Nucleic acid-binding proteins 7 113 IPR012340 -
Ahy13g2775 500 PANTHER BNAC07G49340D PROTEIN 158 422 - -
Ahy13g2775 500 Pfam Replication factor-A C terminal domain 261 390 IPR013955 -
Ahy13g2775 500 Gene3D - 231 405 IPR012340 -
Ahy13g2775 500 CDD RPA1_DBD_C 243 406 IPR013955 -
Ahy13g2775 500 PANTHER REPLICATION FACTOR A 1, RFA1 158 422 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy13g2775 500 SUPERFAMILY Nucleic acid-binding proteins 255 393 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2775 Ahy-Chr13 107422759 107425209 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2775 226 393 Core DNA Replication Machinery Family AT5G08020 27.168 3.77e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2775 - - aip:107633426 1000.35