Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2746 ATGGCTGCAACTACTGCTTTTTCTTGTTCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTATGAAGCACACTACTCAGCACCTCAACCGAACCAAACTCCTCATGGAACAACAACACCCAACCAAGCATCCATATCCTAAACTCATACGAATACGCGTCACCGATGCCGACGCCACCGATTCGTCCAGCGACGACGAACCACCTACCCACTCCTCCACCCGCCGCCGAGTCAAGAACTTCGTCAACGAGATCACCATTGCCTCCTCCGCTCAAGAAGCCAGCGCTACACTCGCTTCCAACAAGAGAAAGAAGAAGGCCAAGTCTACCGCTGCCATCGCAGCTCCGCCCAGCCGCCGGCGTCAGTCAAAGGCCTTCTCCGGGAAGAAGTTCCGGGGAGTGAGGCAGAGACCATGGGGCAAGTGGGCTGCTGAGATAAGAGACCCTTCTCGCCGCGTTAGGTTGTGGCTGGGAACCTACGACACCGCCGAGGAAGCCGCCATGGTGTACGACAACGCTGCCATTCAGCTTCGTGGCGCCGACGCTCTCACGAACTTCATCATTCCGCCGGCGCAGTGCTTGGCGGAGGATAACAATTCCAGCGAAGAAGAATGCACTCCAATCAGCAACAAGAAGGAGAAGAACATGTTGTCTCCCACTTCGGTTCTTCTTCGGTGTTGTTCGGAAGAAACAGAATGCGCAACCGCCACCAGTGAAGAATATGAGTATCAGAGCGAGTCAATGTTTCCGATTCCGAACGATTCACTCTTTGATTTCCAAACAGAGGAGCTTTTCAGCGATGATTTTTCAAGTGTGTTTTTGAGCTCGATTGACGAGACTCTTTTGGATTTCGGTTTCAAGAGTAGTAGTCCTTGGTACATAGATTATGATGGCACTTTCCAAGAGATTGCGGATTTCTTTGTCTCCGATCCTCTTGTGGCTCTCTGA 963 0.5119 MAATTAFSCSASSSSSSSSSSSSSSSMKHTTQHLNRTKLLMEQQHPTKHPYPKLIRIRVTDADATDSSSDDEPPTHSSTRRRVKNFVNEITIASSAQEASATLASNKRKKKAKSTAAIAAPPSRRRQSKAFSGKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAMVYDNAAIQLRGADALTNFIIPPAQCLAEDNNSSEEECTPISNKKEKNMLSPTSVLLRCCSEETECATATSEEYEYQSESMFPIPNDSLFDFQTEELFSDDFSSVFLSSIDETLLDFGFKSSSPWYIDYDGTFQEIADFFVSDPLVAL* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2746 320 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 316 - -
Ahy13g2746 320 Gene3D AP2/ERF domain 134 193 IPR036955 GO:0003700|GO:0006355
Ahy13g2746 320 Pfam AP2 domain 135 184 IPR001471 GO:0003700|GO:0006355
Ahy13g2746 320 ProSiteProfiles AP2/ERF domain profile. 135 192 IPR001471 GO:0003700|GO:0006355
Ahy13g2746 320 SMART rav1_2 135 198 IPR001471 GO:0003700|GO:0006355
Ahy13g2746 320 PRINTS Ethylene responsive element binding protein signature 136 147 IPR001471 GO:0003700|GO:0006355
Ahy13g2746 320 PRINTS Ethylene responsive element binding protein signature 158 174 IPR001471 GO:0003700|GO:0006355
Ahy13g2746 320 MobiDBLite consensus disorder prediction 1 83 - -
Ahy13g2746 320 SUPERFAMILY DNA-binding domain 135 192 IPR016177 GO:0003677
Ahy13g2746 320 MobiDBLite consensus disorder prediction 102 135 - -
Ahy13g2746 320 MobiDBLite consensus disorder prediction 1 41 - -
Ahy13g2746 320 CDD AP2 134 191 IPR001471 GO:0003700|GO:0006355
Ahy13g2746 320 MobiDBLite consensus disorder prediction 54 83 - -
Ahy13g2746 320 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 30 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2746 Ahy-Chr13 104655575 104658501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2746 27 320 AP2-EREBP Transcription Factor Family AT4G23750 39.067 1.54e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy13g2746 AP2 3.70E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2746 - - ahf:112732493 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2746 13 104655575 104658501 Ahy13g2746 13 104655575 104658501 ECH
Ahy13g2746 13 104655575 104658501 Ahy3g2418 3 101875273 101876937 hybridization
Ahy5g1549 5 41181472 41183396 Ahy13g2746 13 104655575 104658501 PCT