Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2729 ATGGCTGACACTGCTGCAGAAGTTCCCACAAGGAGGTCAAGGAGCAAAAGGGCTCTCAAGGACAAAAACTCGTCAACAAATGAGTCCGCAAACACCATCACCACCAAGGTCTCAGAATTCACACCTCCAATTTCTGAACAAGTGATAATGAAGGAGAACCTCGACACCACCACCACCGTTTCTCAACCCAAGAAAGGAAGAGCTGCTTCAAAGAAACAAAGCACGAAGCAGCAGCAGCAGCAATCTCCTTCTTTTGAGAAAGAGTTGCTTGAGATGCAGGAGAAGCTGCAGCAGCTGCACCTCGAGAAGGAGAAAACCGAGGAGCTCTTAAAAGCCAAGGATGAGGCCCTCAAGCTCAAGGACCAAGAGCTTGAAAACCGAGGCAAGGAACAGGAGAAGCTCCAGACCGAGCTCAAGAAGCTCCAGAAGTTGAAGGAGTTCAAACCCACCATGAACTTGCCTCTTCCGAAAGATAAGGAACAAGACAAGAAGGACAAGAAGAAAAGGCCCTCTGCTCCTTACATTCTGTGGTGCAAGGATCAATGGAATGAGATCAAGAAAACAAACCCAGAGGCAGAATTCAAGGACATCTCAAACATGTTGGGGGCTAAATGGAAGACAGTTAGCGCTGAAGAGAAGAAGCCGTACGAAGAGAAGTACAATGCTGAAAAAGAAGCATATATGGAGGTAATGGCGAAGGAAAAGCGCGAGACGGAGGCACTGAAGCTGTTGGAAGAGGATCAGAAGCAGAAGATGGCGATGGAGCTTCTTGAACAGTACATGCAGTTCAGACAAGAAGCAGAGAAAGAGACTACAAAGAAGAACAAGAAAGAGAAGGATCCATTGAAGCCAAAGCACCCGATGTCAGCATATATCCTTTTCACAAACGATAGGCGTGCGGCTCTTGTTGCGGAGAACAAGAGCGTTGTGGAAGTTGCGAAGATCACAGGGGAAGAGTGGAAGAACATGACGGAGGAACAGAAGAGGCCTTACGAGGAGATGGCGAATAAGAAGAAGGAGCAGTATGTTCAAGAAATGGAAGCTTATAAGCAGAGGAAACATGAAGAGGCTGCAAATCTCATGAAGGAAGAGGAGGAGCACATGAAGCTTCAGAAGCAGGAAGCGTTGCAGCTCCTCAAGAAGAAAGAGAAAACTGAAATCCTCATCAAGAAAACAAAGCAGAAGAAGAAGCAGAACAAGGAAGATAAGAATTCTGACCCAAACAGGCCTAAGAGGCCTCCATCCTCATTCCTCTTATTCAGCAAGGAAGCAAGGAAAGCTTTACAGGAGGAACGTCCAGGAATCAACATTTCCACCCTTAATGCACTCATTTCATTGAAGTGGCAGGAACTGAGCGAGGAAGAGAGACAAATATGGAATGGGAAAGCAAGTGAAGCAATGGAAGTGTACAAGAAGGAATTGGAGGAATACAACAAAACCATTGCTACTTCAACTGAAGAATGA 1464 0.4611 MADTAAEVPTRRSRSKRALKDKNSSTNESANTITTKVSEFTPPISEQVIMKENLDTTTTVSQPKKGRAASKKQSTKQQQQQSPSFEKELLEMQEKLQQLHLEKEKTEELLKAKDEALKLKDQELENRGKEQEKLQTELKKLQKLKEFKPTMNLPLPKDKEQDKKDKKKRPSAPYILWCKDQWNEIKKTNPEAEFKDISNMLGAKWKTVSAEEKKPYEEKYNAEKEAYMEVMAKEKRETEALKLLEEDQKQKMAMELLEQYMQFRQEAEKETTKKNKKEKDPLKPKHPMSAYILFTNDRRAALVAENKSVVEVAKITGEEWKNMTEEQKRPYEEMANKKKEQYVQEMEAYKQRKHEEAANLMKEEEEHMKLQKQEALQLLKKKEKTEILIKKTKQKKKQNKEDKNSDPNRPKRPPSSFLLFSKEARKALQEERPGINISTLNALISLKWQELSEEERQIWNGKASEAMEVYKKELEEYNKTIATSTEE* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2729 487 Coils Coil 332 402 - -
Ahy13g2729 487 MobiDBLite consensus disorder prediction 387 424 - -
Ahy13g2729 487 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 167 235 IPR009071 -
Ahy13g2729 487 MobiDBLite consensus disorder prediction 263 289 - -
Ahy13g2729 487 MobiDBLite consensus disorder prediction 24 42 - -
Ahy13g2729 487 CDD HMGB-UBF_HMG-box 169 232 - -
Ahy13g2729 487 Coils Coil 217 237 - -
Ahy13g2729 487 CDD HMGB-UBF_HMG-box 284 347 - -
Ahy13g2729 487 MobiDBLite consensus disorder prediction 50 87 - -
Ahy13g2729 487 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 7 485 IPR044601 GO:0003677
Ahy13g2729 487 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 7 485 - -
Ahy13g2729 487 Coils Coil 253 280 - -
Ahy13g2729 487 MobiDBLite consensus disorder prediction 9 23 - -
Ahy13g2729 487 Gene3D High mobility group box domain 161 243 IPR036910 -
Ahy13g2729 487 MobiDBLite consensus disorder prediction 263 285 - -
Ahy13g2729 487 SUPERFAMILY HMG-box 405 480 IPR036910 -
Ahy13g2729 487 Coils Coil 89 144 - -
Ahy13g2729 487 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 410 478 IPR009071 -
Ahy13g2729 487 MobiDBLite consensus disorder prediction 1 88 - -
Ahy13g2729 487 SUPERFAMILY HMG-box 154 232 IPR036910 -
Ahy13g2729 487 MobiDBLite consensus disorder prediction 141 171 - -
Ahy13g2729 487 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 284 350 IPR009071 -
Ahy13g2729 487 SMART hmgende2 409 479 IPR009071 -
Ahy13g2729 487 SMART hmgende2 283 351 IPR009071 -
Ahy13g2729 487 SMART hmgende2 166 236 IPR009071 -
Ahy13g2729 487 Coils Coil 460 487 - -
Ahy13g2729 487 Pfam HMG (high mobility group) box 410 478 IPR009071 -
Ahy13g2729 487 Pfam HMG (high mobility group) box 168 232 IPR009071 -
Ahy13g2729 487 Pfam HMG (high mobility group) box 284 350 IPR009071 -
Ahy13g2729 487 CDD HMGB-UBF_HMG-box 410 475 - -
Ahy13g2729 487 SUPERFAMILY HMG-box 272 357 IPR036910 -
Ahy13g2729 487 Gene3D High mobility group box domain 389 486 IPR036910 -
Ahy13g2729 487 Gene3D High mobility group box domain 267 365 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2729 Ahy-Chr13 102389289 102391324 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Ahy13g2729 HMG_box 1.60E-16 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2729 K09273 - gmx:100783033 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2729 13 102389289 102391324 Ahy13g2729 13 102389289 102391324 ECH
Ahy13g2729 13 102389289 102391324 Ahy3g2410 3 100960474 100962491 hybridization