Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2699 ATGGCTACCGTGCCGCCATGTATATTATTCCTCTTCTTGGTGGCGCTAACAAGCATAGGCATAGCAAAGGCTCAGTTCTACTGCGAAAGCATATCATGCGGGAAGGGAGGAGTTTCAATTGAGTTCCCGTTTTACCTGAGAGAAAATCAAATCCCTGGATGTGGCTACCCAGGGTTCGAGCTCTCATGCGCCAACACCACCACGGAGCCCTTGCTGACTCTCCCAGCTGAACCAGGTCACTTCACTGTGAAACTCATCTCCTTAGAAGACCAACAAGTTTGGATCAACGACCCTCAGGAATGCCTCCCAAAGCGTTTGATGCGTGAGCGTGGCCTCAACCTCCAACTCTCACCCTTCCAATTAAGCTCTGCTTACTCGCTTGTCAACTACACCTTCCTCAGATGCCCTTCAAATTTAACCGCTTTGTCTATGGTACAACCAATACCCTGTTTGAACTCAGGGTTTAATAGTAGTAGCAAATCTTCGGTGGTGGCGATCTTGTCGAATCCGCCGTTTCCAACGCCGTGGACGTCGCCGTGCCACGTCATATCGTGGGCTATGATCCCGGTTGCCGGTTTTCCGTGGCCGTTTTGGACGGATTATTATTCTGACATAAAGTTGGAATGGGATAACCCAAATTGCGGAAGTTGCGAGGCACGTGGAGGACGGTGTGGGTTCGTTGGCCCAACGCTCCGGGACACTGCTTTTCATGTTGGTTGTTACGATCTTCCCACTCAACTTCAAGGTCTTTCAAAGAAAACCAAGTACGGTTTAGGTATGGGCCTAGGAATACCTGGAGCCTTGTGTATTATTGTGCTTGCATATTTGTTCTACGCCAAGATGAAGACACATGAGCAACAGAGGCTATCAAGAAGTGATTTTTCGACCATAATTTTACCGCGTCTTCCTGTTCAAATCATGGGATTGGATGCTGCTAGCATAGAAAAATACCCCAAAACCCTGCTTGGTGAAAGTGGGCGATTGCCTAAGCCTAATGACAATCTTTGTTCCATATGTCTCTGTGAGTACCAGCCCAAGGAGACCTTGAGGACCATACCTGAATGCAATCACTATTTTCATGCCAATTGCATAGATGGATGGCTCAAGATGAATGCTACTTGTCCTCTTTGTCGCAATTTACCTGAAAGATCTGTTGCATCATTAACCCCGTCTATACCTGCATCTCCCACTTATTAG 1197 0.4754 MATVPPCILFLFLVALTSIGIAKAQFYCESISCGKGGVSIEFPFYLRENQIPGCGYPGFELSCANTTTEPLLTLPAEPGHFTVKLISLEDQQVWINDPQECLPKRLMRERGLNLQLSPFQLSSAYSLVNYTFLRCPSNLTALSMVQPIPCLNSGFNSSSKSSVVAILSNPPFPTPWTSPCHVISWAMIPVAGFPWPFWTDYYSDIKLEWDNPNCGSCEARGGRCGFVGPTLRDTAFHVGCYDLPTQLQGLSKKTKYGLGMGLGIPGALCIIVLAYLFYAKMKTHEQQRLSRSDFSTIILPRLPVQIMGLDAASIEKYPKTLLGESGRLPKPNDNLCSICLCEYQPKETLRTIPECNHYFHANCIDGWLKMNATCPLCRNLPERSVASLTPSIPASPTY* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2699 398 Pfam Wall-associated receptor kinase galacturonan-binding 28 97 IPR025287 GO:0030247
Ahy13g2699 398 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 395 - -
Ahy13g2699 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 382 IPR013083 -
Ahy13g2699 398 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 10 395 - -
Ahy13g2699 398 ProSiteProfiles Zinc finger RING-type profile. 336 378 IPR001841 -
Ahy13g2699 398 SMART ring_2 336 377 IPR001841 -
Ahy13g2699 398 SUPERFAMILY RING/U-box 331 380 - -
Ahy13g2699 398 Pfam Ring finger domain 335 378 IPR001841 -
Ahy13g2699 398 CDD RING-H2_PA-TM-RING 336 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2699 Ahy-Chr13 100975938 100977582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2699 28 381 C3H Transcription Factor Family AT2G46495 34.167 8.92e-56 185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2699 13 100975938 100977582 Ahy3g2383 3 99208479 99210359 hybridization