Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2693 ATGGCTTCATCAGTATTAGTGGCCCAATTATGTTTACTGGTTGCCTTTGTATTCCATAATCTTCAAATCACAAGAAGCAAACAGGTTTGCGATGTGAAGTCATGCGGCGAAATCGAAGATATTCAGTTCCCTTTCGGGTTGAAAGAAGCCAATCAAGAGCCTCAGTGCAGCTATTACCCTGACCCCAGTTTCCATCTCTCGTGCAAGCGCAACAACCTCACTCAAACAATCCTCACTCTCCCCAAAACAGAGGACTTGGTAATCAAGAGCATCGATTACGAGGAACAAACCATCCAAGTCAACGATCCCAAAGGTTGTCTCCCAAAACGGTTCTTGCACAATAACTGGGACCTTTCGGATTCACCATTCACGCTCGACATCGCACGCTACAAATATTTCAATCTGACCTTCCTCAGTTGCCCCTCAAACTGGACCAAATCCACGGGGTCACCTAGAATCGCATGCCTCAGTGACAACACTGGAAACTCGGTCATAGTCTTAGGGCTGCGTCCTATTGACACGTCATCAACGTGTGACGTGATATCCACGGCTCTTGTGCCGCTTCCGATGGTGGATATGCCTCAGTGGCCATTCTGGCCTGATCTCAACCACGATATTGGCTTGGCTTGGACCCAACCTAGGTGCTCCCAATGTGCGGTTAGTGGCCAACGTTGTGGCTTCGTCAACGATAAAACTTCTCGAGTTGGATGCTTTTCTACTCCCACCAAAAACCAAGGTCTTAGCAGCAGTGCCAAATATGGCTTAACCTTAGGAGTGGGAGTTCCCGGGCTCTTATGTTTAATTGGGCTTTCATGCTTCATTTGCGGTAAGGTCAAGGTTCATATTCATCGCCGACAGCCCATCAGAGAGTTCCCAACAATTTCCCTACAGCCTATTACTCTTGCAATGGGCCTTGATAGGACCACAATTGAAAAGTACCCAAAGACTCTTATCGGTGAGAGCGGGCGCTTGTTGAAGCCCACTGATAATACCTGCTCAATATGCCTCTGTGAATATGAGCCTAAAGATACTTTGAGGACCATACCTGAGTGCAACCATTATTTCCATGCTGAGTGCATAGACGAGTGGCTCAGAATGAATGGAACCTGCCCCTTGTGCAGGAACACACCGGGGGCATTATCTAGAGTTAACCCTTCTTTCTCTTCTTTGTCTCATCACACTTCATCAATGTCCTCTACGCCATAA 1206 0.4735 MASSVLVAQLCLLVAFVFHNLQITRSKQVCDVKSCGEIEDIQFPFGLKEANQEPQCSYYPDPSFHLSCKRNNLTQTILTLPKTEDLVIKSIDYEEQTIQVNDPKGCLPKRFLHNNWDLSDSPFTLDIARYKYFNLTFLSCPSNWTKSTGSPRIACLSDNTGNSVIVLGLRPIDTSSTCDVISTALVPLPMVDMPQWPFWPDLNHDIGLAWTQPRCSQCAVSGQRCGFVNDKTSRVGCFSTPTKNQGLSSSAKYGLTLGVGVPGLLCLIGLSCFICGKVKVHIHRRQPIREFPTISLQPITLAMGLDRTTIEKYPKTLIGESGRLLKPTDNTCSICLCEYEPKDTLRTIPECNHYFHAECIDEWLRMNGTCPLCRNTPGALSRVNPSFSSLSHHTSSMSSTP* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2693 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 378 IPR013083 -
Ahy13g2693 401 CDD RING-H2_PA-TM-RING 331 374 - -
Ahy13g2693 401 SUPERFAMILY RING/U-box 331 377 - -
Ahy13g2693 401 Pfam Ring finger domain 330 374 IPR001841 -
Ahy13g2693 401 Pfam Wall-associated receptor kinase galacturonan-binding 30 102 IPR025287 GO:0030247
Ahy13g2693 401 ProSiteProfiles Zinc finger RING-type profile. 332 374 IPR001841 -
Ahy13g2693 401 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 400 - -
Ahy13g2693 401 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 400 - -
Ahy13g2693 401 SMART ring_2 332 373 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2693 Ahy-Chr13 100313520 100317153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2693 42 380 C3H Transcription Factor Family AT2G25410 35.920 4.00e-55 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2693 - - adu:107479323 582.408