Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2588 ATGATGCTAGGTGAGTCACACCGCTCAAATCCAACCGTCCATGTGCCACCGTGGCCACCGCTCCTTGATGATCCAACGGCGGAGATGTATTCCCCCTTCTCTGGCACCGGACTGTCCGTACACTCCGACTCCAATGCCGCCGATTACTCTCCCTACTACATGCACGAAGCCATCTCCGCGCTGCAGCGCTACCTTCCCTCCAACGACGTCGTAGACGATGACTCCGATTCTGAGGCTGCGCGTGATATAGACGCGCCGGTGGACGCATACTCGTGCGACCACTTCCGCATGTTCGAGTTCAAGGTGAGGAGGTGCGCGCGTGGCAGGTCCCATGACTGGACGGAGTGTCCGTACGCCCACCCTGGAGAGAAGGCTCGCCGCCGTGACCCGAGGAAGTTCCACTACTCCGGCGCCGCGTGCCCCGATTTCCGTAAGGGTGGTTGCAAGAAGGGTGACGCATGCGAGTACGCGCACGGCGTTTTCGAGTGCTGGCTCCATCCCGCGCGCTACCGCACGCAGCCATGCAAGGACGGAACCAGTTGCCGGAGGAGGGTCTGCTTCTTCGCTCACACGCCGGAGCAACTCAGGGTTCTGCCGCAGCACAGTCCCCGTAGCGTTGATTCCTATGACGGTTCCCCCCTGAGGCATGCAATGGAGTCATCGTGTGCGAAGACGCTTCCTTTTCTGTCTTCTCCGGGATCGGATTCTCCGCCGGCGGAGGATTCCCCACCGATGTCACCGGCGAATCGGTCGTTGGGGCGGTCCGTGAATGTGAGCGAGATGATGGCCTCTCTCCGGAATCTGCAGCTGAGTAAGGTTAAGTCTCTACCCTCTTCATGGAATGTTCCAATGGGGTCTCCCGGGTACGGATCTCCCCGGGGACCCATGATCCGATCCGGATTCTGTAGCCTTCCTTCTACACCAACGGAGGGGCCAGGTGGCAGTGGTGTGAACTGCTTTGAAGTTTGGGATCAGAGTTGCTGCTTTGAGGAGCCAGTTATGGAGAGGGTTGAGTCTGGGAGGGGCATAAGGGCCCGAATGTTCGAGAAGTTGAGCAAAGAGAATTCTCTGGATGGATCGGCTTCCGGTTCGGGTGGAGCTCCGGATGTGGGGTGGGTTTCCGAGCTGATTAAGTGA 1137 0.5928 MMLGESHRSNPTVHVPPWPPLLDDPTAEMYSPFSGTGLSVHSDSNAADYSPYYMHEAISALQRYLPSNDVVDDDSDSEAARDIDAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGAACPDFRKGGCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQHSPRSVDSYDGSPLRHAMESSCAKTLPFLSSPGSDSPPAEDSPPMSPANRSLGRSVNVSEMMASLRNLQLSKVKSLPSSWNVPMGSPGYGSPRGPMIRSGFCSLPSTPTEGPGGSGVNCFEVWDQSCCFEEPVMERVESGRGIRARMFEKLSKENSLDGSASGSGGAPDVGWVSELIK* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2588 378 SMART c3hfinal6 169 192 IPR000571 GO:0046872
Ahy13g2588 378 SMART c3hfinal6 134 160 IPR000571 GO:0046872
Ahy13g2588 378 ProSiteProfiles Zinc finger C3H1-type profile. 135 161 IPR000571 GO:0046872
Ahy13g2588 378 Gene3D - 135 198 - -
Ahy13g2588 378 MobiDBLite consensus disorder prediction 1 21 - -
Ahy13g2588 378 MobiDBLite consensus disorder prediction 229 252 - -
Ahy13g2588 378 PANTHER UNKEMPT FAMILY MEMBER 7 378 IPR045234 -
Ahy13g2588 378 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 159 IPR000571 GO:0046872
Ahy13g2588 378 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2588 Ahy-Chr13 87830448 87832094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2588 84 283 C2H2 Transcription Factor Family AT5G12850 50.962 8.68e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy13g2588 zf-CCCH 2.30E-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2588 - - jre:109010264 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2588 13 87830448 87832094 Ahy13g2588 13 87830448 87832094 ECH
Ahy13g2588 13 87830448 87832094 Ahy3g2269 3 81090089 81091697 hybridization