Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2578 ATGGAAGCTAGTACCGGGCTTTTTGCTGCGACCCATGACAACAATGATCTTGTGGTCATTCAAGGACACAACGAGCCAAGGCCTGTGAAGAACTTAGATGGCCAACTATGTGAAATATGCGGCGACTTAGTGGGACTAACTGTGGACGGAGACTTGTTTGTAGCTTGCGAGGAATGCGGGTTCCCCGTGTGTAGGCCTTGTTACGAGTACGAAAGAAGGGAAGGGACTCAAGTTTGCCCCCAGTGCCATACAAGATACAAGCGTATCAAAGGAAGCCCAAGAGTAGAGGGAGACGAAGACGAAGACGATGTGGATGATATAGAACATGAATTCAAAATGTTGGAAGAAAAGGAAGAGTTGCGGCAAAGGAAGAAGAGTAGCGGATATGATAATGAGAATGCTAAATCAGCATCCTTGGCCAAGGAGCAGGTGAATGGGGAGCTGCCTGTATCTACATACCACGAGCCGGGCTATGAAAAATTTGCTGACAAAGAGAGAGCAGATGACTGGATGTTAAACCAAGGAAATCTATGGCCTGAAACTGAGGCTACAGTTGATCCCGAAAAGGCTATTAAAGATGAAAGTAGACAGCCACTCTCAAGGAAGGTGGCAATACCATCCGGAAGACTCAGCCCTTACAGGATGATGGTTGCAGCGAGGCTCGTGATTCTCTTGCTATTCTTTCAATACAGAATCTTCCACCCAGTACCTGAAGCAATTGGACTCTGGTTCACATCTGTGGTGTGTGAAATTTGGCTAGCATTGTCATGGCTGGTTGATCAACTTCCTAAATGGTTTCCCATTGATCGCCAGACGTATATTGATCGTCTTTCAATCAGATTTGAACCGGCGGACAAGCCGAATATGCTTTCTCCAATAGATATATTTGTCACTACAGTGGATCCGACGAAGGAACCTCCTCTAGTTACAGCCAATACTGTTCTTTCAATCTTGGCTCTGGATTACCCAGCTGACAAAATCTCATGTTACGTTTCTGATGATGGAGCTTCCATGCTCACCTTTGAGGCTCTTCAAGAAACTGCTGAATTCGCAAGAAAATGGGTACCGTTCTGCAGAAAATACTCTGCTGAACCTCGAGCACCAGAGAAGTACTTCTCTGAGAAGATAGATTACATAAAGGATAAGCTTCAGACAACATATGTAAAAGAACGTCGTACTATGAAGAGAGAATATGAAGAATTTAAGGTGAGGATTAATGCACTTGTGGCGAAGTCCATGAGAGTTCCAGCAGAAGGGTGGACAATGAAAGATGAGACACCGTGGCCGGGAAACAACACCAACGATCATCCAAGTATGATACAAGTCCTTCTTGCTCGAGGTGGAGGCCACCACCCCGACCAACTTCCCTGTCTTGTATACATATCTCGTGAGAAAAGGCCGGCATTCCAACACCACAACAAAGCTGGTGCAATAAATGCCTTGCTTCGAGTATCAACAGTGCTAAGCAATGCTCCCTTCGTGCTGAACTTGGATTGCAATCATTATGTTAATAACAGCAAAGTCGTGCGTGAGGCCATGTGTTTCTTTATGGACATCCAACTTGGGAATGGCATTGGCTTTGTTCAGTTTCCTTTAAGATTTGACAGCCTTGACAGGAACGATCGTTATGCCAACAAGAACACTGTTTTGTTTGATATTAACCTAAGGTGCCTAGATGGAATTCAAGGACCTGCTTATGTTGGTTCAGGATGCATCTTCAGCAGGAAAGCTATATATGGTTTGGAACCACCAAAGGTGTCAAAACCGCCACGAATTGTTCAAGTGCACTCAAAACAGGATGAAAATGAAGAGGAAGATGCAGGAATAACAGAAGAAGACAAGCAGCTACTGAAATCAGAGATGAATTTTGAGAACAGATTTCAAAAATCACATTTTGCTAATTCTTCATCAACAGAAGAAGGTGGCGTCGATGCTTCTTCCGGTCAGGAGGCCCTGCTCAAAGAAGCCATTCATGTCATGAGCTGCAAATACGAAGACAGAACTCTATGGGGATATGAGGTTGGCATGAGCTATGGATCTATAGCTGCAGATACTCTTACGAGTTTCAAGTTGCATAGTCGAGGCTGGGAATCGGTATATTGCATGCCGAAGAGAGCTGCATTCAGGGGGACAGCTCCTATCAACCTTACAGATAGACTTAACCAAGTGCTTAGATGGGCGGTGGGATCACTTGAGATCCTCTTCAGCCGCCATTGCCCGCTGTGGTACGGCTTCAACGAAGGAAAAATGAAGACGCTTCAAAGGGTTGCCTATATTAACAGCACTGTCTACCCCTTCAGCTCCATACCTCTTTTGATATATTGTCTCATTCCTGCTATCTGCTTGCTCACTGATAAATTCATCACACCTTCGGTAGGGACATTCGCAAGTCTAGTCTTTATTAGTCTATTCATCACCATCTTTGCATCGGCCATCCTCGAATTGAGATGGAGTGGTGTTAGCCTTGAGGAATGGTGGAGGAATCAGCAATTCTGGGTCATCGGAAGTGTGTCTGCACACATGTTCGCCGTTGTACATAGCCTCATGAAAGCCCTGCCCCTGGTAAGAAGCAATATCAACTTCATCACCGTATCGAAGGCGCCGGACGAAGGGCAGTTCCACCAGCTGTACACCATCAAATGGACTGCTCTCCTTATACCTCCAACTACAATCATAATAATCAACCTCATTGGCATTGTAGCTGGTTTCACAGATGCCATAAACAGTGGTGGACATTCTTGGGGAGCACTTCTTGGGAAGCTCTTCTTCTCTTTGTGGGTTATTGTCCATTTGTACCCATTCCTTAAAGGCCTCATGGGTAGGCAGAACCGAACACCAACGCTTATAGTCATATGGTCGGTGCTTTTGGCTTCTATCTTCTCCTTGGTTTGGGTAAGGATTGACCCTTTTGTGTTGAAAACAAAAGGACCAGACGCTAAGCAATGTGGAATCAGTTGTTGA 2961 0.4519 MEASTGLFAATHDNNDLVVIQGHNEPRPVKNLDGQLCEICGDLVGLTVDGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEDDVDDIEHEFKMLEEKEELRQRKKSSGYDNENAKSASLAKEQVNGELPVSTYHEPGYEKFADKERADDWMLNQGNLWPETEATVDPEKAIKDESRQPLSRKVAIPSGRLSPYRMMVAARLVILLLFFQYRIFHPVPEAIGLWFTSVVCEIWLALSWLVDQLPKWFPIDRQTYIDRLSIRFEPADKPNMLSPIDIFVTTVDPTKEPPLVTANTVLSILALDYPADKISCYVSDDGASMLTFEALQETAEFARKWVPFCRKYSAEPRAPEKYFSEKIDYIKDKLQTTYVKERRTMKREYEEFKVRINALVAKSMRVPAEGWTMKDETPWPGNNTNDHPSMIQVLLARGGGHHPDQLPCLVYISREKRPAFQHHNKAGAINALLRVSTVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNGIGFVQFPLRFDSLDRNDRYANKNTVLFDINLRCLDGIQGPAYVGSGCIFSRKAIYGLEPPKVSKPPRIVQVHSKQDENEEEDAGITEEDKQLLKSEMNFENRFQKSHFANSSSTEEGGVDASSGQEALLKEAIHVMSCKYEDRTLWGYEVGMSYGSIAADTLTSFKLHSRGWESVYCMPKRAAFRGTAPINLTDRLNQVLRWAVGSLEILFSRHCPLWYGFNEGKMKTLQRVAYINSTVYPFSSIPLLIYCLIPAICLLTDKFITPSVGTFASLVFISLFITIFASAILELRWSGVSLEEWWRNQQFWVIGSVSAHMFAVVHSLMKALPLVRSNINFITVSKAPDEGQFHQLYTIKWTALLIPPTTIIIINLIGIVAGFTDAINSGGHSWGALLGKLFFSLWVIVHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRIDPFVLKTKGPDAKQCGISC* 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2578 986 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Ahy13g2578 986 Coils Coil 391 411 - -
Ahy13g2578 986 PANTHER CELLULOSE SYNTHASE 1 986 - -
Ahy13g2578 986 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Ahy13g2578 986 SUPERFAMILY Nucleotide-diphospho-sugar transferases 302 795 IPR029044 -
Ahy13g2578 986 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Ahy13g2578 986 SUPERFAMILY RING/U-box 22 105 - -
Ahy13g2578 986 Pfam Cellulose synthase 598 980 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ahy13g2578 986 Pfam Cellulose synthase 293 591 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ahy13g2578 986 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 282 388 IPR029044 -
Ahy13g2578 986 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 437 582 IPR029044 -
Ahy13g2578 986 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 986 - -
Ahy13g2578 986 MobiDBLite consensus disorder prediction 118 141 - -
Ahy13g2578 986 Coils Coil 97 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2578 Ahy-Chr13 86876800 86884125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2578 1 986 Cell Wall Biosynthesis AT5G17420 63.689 0.0 1353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2578 K10999 - gmx:100777270 1622.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2578 13 86876800 86884125 Ahy3g2257 3 79481711 79490083 hybridization
Ahy13g2578 13 86876800 86884125 Ahy11g2935 11 146943514 146948558 PCT
Ahy13g2578 13 86876800 86884125 Ahy1g2784 1 107807732 107811460 PCT