Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2554 ATGGCTTTTCGCGACCACCAACCACACGAAATTACTTTTCAGTCCTTCACGGACGAGCAACATTTAAATCAGAACAGAGACATGCAGAGGATGCTAACTCTCTCCGGCGCCGGCGATGGAGGACCGGCTCCGACGTGGCTGAACAACGTTCGGCAGCAGAATTTCCTGCACCTTCAGCCGGACGCGTCGTCGGCACGAAACGACGACGTTCGAGGCATGATGGCGGCGGCAGCTACGTCACCGGAGAAGAGCATGGATCATCGGAAGAACCACCTCCAGCAGCAGCGGACGATGACGGAAAGTAACAACTGCGACTCAGAGGATGCGGCGGAGTACAAGGCGGACATCCTAGGACACCCGCTTTACGAGCAGCTGCTGTCGGCGCACGTGTCGTGTCTGAGGATTGCGACGCCCGTTGACCAGCTACCGAGAATCGACGCTCAGTTGCAGCAGTCGCAGCGCGTGGTGGAGAAGTACTCTGCGCATGGGAATAATGGTGCTCTCAATGAGAAGGAGCTTGATAACTTCATGACACATTACGTTCTATTGCTTTGCGCTTTTAAAGAACAATTGCAACAACATGTCCGTGTGCATGCCATGGAAGCAGTGATGGCTTGTTGGGAGCTCGAGCAGTCTCTACAAAGCTTGACGGGTGTATCTCCCGGAGAAGGGACAGGTACGACGATGTCGGACGACGAAGACGATCAGGCGGCAGAGAGCAATGGCAACTTGTACGAAGGATGTTTAGATGGCGCTGATAGTCTCAGCTTTGGCCCTCTTGTTCCAACTGAAACTGAAAGATCTCTAATGGAGCGTGTTCGCCAGGAGCTAAAGCACGAGCTAAAACAGGGTTACAAGGATAAAATTGTTGACATAAGAGAAGAAATTCTGCGAAAGAGAAGAGCCGGGAAGCTTCCTGGAGATACCACCTCTCTCTTAAAAGCTTGGTGGCAATCTCATTCTAAATGGCCCTATCCAACGGAAGAAGACAAGGCGAGGCTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAGAGGAAAAGGAATTGGCATACTAATCCTTCGTCGTCTACTGGCTCCAAAAGCAAGCGCAAGAATAATAATAATAATAATAGTGGTGGTGCAGGTGAAACAAATAACCAGAGCTTCATGTGA 1176 0.5051 MAFRDHQPHEITFQSFTDEQHLNQNRDMQRMLTLSGAGDGGPAPTWLNNVRQQNFLHLQPDASSARNDDVRGMMAAAATSPEKSMDHRKNHLQQQRTMTESNNCDSEDAAEYKADILGHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSAHGNNGALNEKELDNFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGTTMSDDEDDQAAESNGNLYEGCLDGADSLSFGPLVPTETERSLMERVRQELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGSKSKRKNNNNNNSGGAGETNNQSFM* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2554 391 Pfam KNOX2 domain 170 217 IPR005541 GO:0003677|GO:0005634
Ahy13g2554 391 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 34 378 - -
Ahy13g2554 391 SMART KNOX2_2 163 218 IPR005541 GO:0003677|GO:0005634
Ahy13g2554 391 SMART ELK_2 276 297 IPR005539 GO:0003677
Ahy13g2554 391 MobiDBLite consensus disorder prediction 353 391 - -
Ahy13g2554 391 SMART HOX_1 298 363 IPR001356 GO:0003677
Ahy13g2554 391 SUPERFAMILY Homeodomain-like 298 362 IPR009057 -
Ahy13g2554 391 ProSiteProfiles ELK domain profile. 276 296 IPR005539 GO:0003677
Ahy13g2554 391 Pfam KNOX1 domain 112 153 IPR005540 GO:0003677|GO:0005634
Ahy13g2554 391 SMART KNOX1_2 110 154 IPR005540 GO:0003677|GO:0005634
Ahy13g2554 391 Pfam ELK domain 276 297 IPR005539 GO:0003677
Ahy13g2554 391 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 34 378 - -
Ahy13g2554 391 CDD homeodomain 299 360 IPR001356 GO:0003677
Ahy13g2554 391 Gene3D - 297 358 - -
Ahy13g2554 391 ProSiteProfiles 'Homeobox' domain profile. 296 359 IPR001356 GO:0003677
Ahy13g2554 391 MobiDBLite consensus disorder prediction 217 241 - -
Ahy13g2554 391 Pfam Homeobox KN domain 316 355 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2554 Ahy-Chr13 84033289 84043931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2554 110 380 Homeobox Transcription Factor Family AT5G11060 81.752 1.24e-162 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ahy13g2554 KNOX2 4.70E-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2554 - - gmx:100816347 575.089