LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy13g2514	ATGCAGGTCATGTCAAATTTACTCTATTTTTGTGGCATGTGCGGAGTGGCAAAGGAAATGTTGCTGAAGTGGTACTATAGCAAGGACATTCGAGGTGGTGCTCAATTCCCAGAGTCAGATATAGTTAAAGCTTGCCGAAGGTTAGCTTATAACTTCTCACTGCTCCAACTCTTCCGTGGCGACACTATCCTCATCAAGGGCAAGAAAAGGAAGGATACTGTTTGCATAGCTCTTGCTGATGACACCTGTGAAGAGCCCAAGATCAGGATGAACAAAGTTATGAGGTCGAATTTGCGGGTTCGTCTTGGAGATGTTGTGTCCGTACACCAGTGCCCTGATGTGAAGTATGGGAAACGTGTGCACATTCTGCCTATTGATGATACCATTGAAGGTGTCACTGGCAATCTGTTTGATGCTTTCTTGAAACATTATTTCTTGGAAGCTTATCGTCCTATAAGAAAAGGAGATCTATTTCTTGTCTGTGGAGGGATGAGAAGTGTGGAGTTTAAGGTCATTGAAACTGATCCTGGGGAGTACTGTGTGGTTGCTCCAGATACTGAAATCTTCTGTGAGGGGGAGTCTTTGAAAAGAGAGGATGAAGAGATGCTGGATAAAGTTGGATATGATGATGTGGGTGGAGTCAGGAAACAAATGGCACAAATTTGTGAGTTGGTAGAGCTTCCCTTGAGGCATCCACAACTCTTTAAGTCGATTGGTGTGAAACCACCCAAAGGTATTCTACTTTATGGACCCCCTGGTTCCGGGAAGACACTGATAGCAAGAGCTGTTACTAATGAAACGGGAGCTTTCTTCTTTTGTATAAATGGACCGGAGATTATGTCCAAACTGGCAGGAGAGAGTGAAAGCAATTTGAGGAAAGCATTTGAAGAGGCTGAAAAGAATGCACCATCCATCATCTTAATTGATGAAATTGATTCTATTGCACCCAAGAGGGAGAAGACACATGGTGAAGTTGAAAGGAGGATTGTTTCACAGCTTTTGACTCTTATGGATGGATTGAAATCTCATGCTCATGTTATCGTTATTGGAGCTACCAATCGCCCAAACAGCATTGACCTAGCATTGAGAAGGTTCGGTAGATTTGATAGGGAAATTGATATTGGTGTTCTTGATGAAGTTGGCCGACTTGAAGTTCTTCGTATACACACTAAAAACATGAAGCTCTCTGATGATGTAAGTTTCATTGTCTCTTAA	1215	0.4255	MQVMSNLLYFCGMCGVAKEMLLKWYYSKDIRGGAQFPESDIVKACRRLAYNFSLLQLFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVMRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLKHYFLEAYRPIRKGDLFLVCGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGESLKREDEEMLDKVGYDDVGGVRKQMAQICELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVTNETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIILIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSHAHVIVIGATNRPNSIDLALRRFGRFDREIDIGVLDEVGRLEVLRIHTKNMKLSDDVSFIVS*	405

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy13g2514	404	ProSitePatterns	AAA-protein family signature.	346	364	IPR003960	GO:0005524\|GO:0016887
	Ahy13g2514	404	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	207	399	IPR027417	-
	Ahy13g2514	404	SMART	CDC48_2_2	131	197	IPR004201	-
	Ahy13g2514	404	SMART	AAA_5	242	378	IPR003593	-
	Ahy13g2514	404	Pfam	Cell division protein 48 (CDC48), domain 2	133	193	IPR004201	-
	Ahy13g2514	404	Pfam	ATPase family associated with various cellular activities (AAA)	246	375	IPR003959	GO:0005524\|GO:0016887
	Ahy13g2514	404	PANTHER	AAA-FAMILY ATPASE	52	400	-	-
	Ahy13g2514	404	CDD	AAA	241	375	-	-
	Ahy13g2514	404	Gene3D	-	50	113	-	-
	Ahy13g2514	404	PANTHER	CELL DIVISION CONTROL PROTEIN 48 HOMOLOG E	52	400	-	-
	Ahy13g2514	404	SUPERFAMILY	ADC-like	53	111	IPR009010	-
	Ahy13g2514	404	Gene3D	-	378	395	-	-
	Ahy13g2514	404	SUPERFAMILY	Cdc48 domain 2-like	113	204	IPR029067	-
	Ahy13g2514	404	Gene3D	-	209	377	IPR027417	-
	Ahy13g2514	404	Gene3D	-	114	208	-	-
	Ahy13g2514	404	Pfam	Cell division protein 48 (CDC48), N-terminal domain	52	112	IPR003338	-
	Ahy13g2514	404	SMART	CDC48_N_2	39	114	IPR003338	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy13g2514	Ahy-Chr13	70876011	70879299	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy13g2514	205	399	Calmodulin-binding Proteins	AT3G56690	48.223	2.01e-51	183

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy13g2514	K13525		-	aip:107633205	712.22