Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2438 ATGGAGGGCGTCACTGTGGTGAAGCCAGAGGCCGAGGAGGTTACAGGGGAAGTGCAGAAAGACCAGGAACTGGTTCTAGAATCTTCTCACCCTGTTGTGGAGGACAGTGTTGATAGAGTTAGCAGCACTGACATGGAGGAACAACAGCTCCAGAACAACAACGTTGGTGATGATAACAAGTCATTGCCAGCTTCTGGACTTAATGCTGTAATTTCTAGCCCAAGCCAACTTACCATCTTCTATAATGGAAGTGTCTGTGTGTATGATGGACTCCCTGCTGACAAGGTGCATGAAATAATGCTTATTGCTGCTGCTACTGCAAAGTCAGCTGAAATGAAGAAGATTAATCCACAGTCTCCTTTTGTTTCAGCTGTTCCCACAAGGCCTTCTTCGCCACATGCAACCTCCAATAATGTTGCTTCTCCTCAGTCAATCTGCTTCCCTGCGGAGAAGAATTCCATCTGCAGGCTGCAAGAGTTCCCAATAGCACGCAGGCATTCACTGCAAAGGTTTCTTGAGAAGCGTCGAGACAGGTTGGGGAGCAAAGCCCCGTATCCTACCTTGTCAACAACAAAAATGGCTGACAACATAGAGAACAACTTCAGTGCCGACAATGCACCGGATTTGGTTAAGCGATCAGAAGAGGAGTTGCAGCCAACTGTAGCTGCCTCTTGA 675 0.477 MEGVTVVKPEAEEVTGEVQKDQELVLESSHPVVEDSVDRVSSTDMEEQQLQNNNVGDDNKSLPASGLNAVISSPSQLTIFYNGSVCVYDGLPADKVHEIMLIAAATAKSAEMKKINPQSPFVSAVPTRPSSPHATSNNVASPQSICFPAEKNSICRLQEFPIARRHSLQRFLEKRRDRLGSKAPYPTLSTTKMADNIENNFSADNAPDLVKRSEEELQPTVAAS* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2438 224 Pfam Jas motif 161 185 IPR018467 -
Ahy13g2438 224 MobiDBLite consensus disorder prediction 121 140 - -
Ahy13g2438 224 MobiDBLite consensus disorder prediction 26 42 - -
Ahy13g2438 224 MobiDBLite consensus disorder prediction 181 224 - -
Ahy13g2438 224 MobiDBLite consensus disorder prediction 184 203 - -
Ahy13g2438 224 Pfam tify domain 73 104 IPR010399 -
Ahy13g2438 224 MobiDBLite consensus disorder prediction 26 60 - -
Ahy13g2438 224 PANTHER DIVERGENT CCT MOTIF PROTEIN 35 204 - -
Ahy13g2438 224 SMART tify_2 70 105 IPR010399 -
Ahy13g2438 224 MobiDBLite consensus disorder prediction 43 60 - -
Ahy13g2438 224 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 35 204 IPR040390 -
Ahy13g2438 224 ProSiteProfiles Tify domain profile. 70 105 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2438 Ahy-Chr13 56411451 56416176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2438 74 187 Tify Gene Family AT5G20900 51.724 4.67e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Ahy13g2438 tify 6.10E-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2438 K13464 - gmx:100306045 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2438 13 56411451 56416176 Ahy3g2190 3 69635295 69640033 hybridization
Ahy11g2181 11 134475270 134478820 Ahy13g2438 13 56411451 56416176 PCT
Ahy1g2652 1 105541755 105545282 Ahy13g2438 13 56411451 56416176 PCT
Ahy13g2438 13 56411451 56416176 Ahy11g2181 11 134475270 134478820 PCT
Ahy13g2438 13 56411451 56416176 Ahy1g2652 1 105541755 105545282 PCT