Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2434 ATGGCTAGAACCCCGTTATTATTCACTTCATTGTCATTGCTTTTCACTCAGTTCCTATTCACCCCATTTGATGCTGTTCTTGGTTCAAAAGGATCACTAGAATGCCTTAAAGTTTCTCATGCCGAGTTCACTAACTCAGCTAAAGAAGTTGTTGGTGTCTTGAAAAGTGTTACATCCATTCTAAATTCTGAGTTTGTTAGAAATGGCGGAGGCTTTGTCGATGATCATCGCCTTTCGAGCGCTGTTTCAGCGTGCCTTGAGTTGATGGACTTGTCCTCCGATGAGCTCAGCTGGGTTGTGTCCGTTTCTGAAAGTCCCAAAGGCAAGCATAACGGCACTGGTAATTTGAGCTCTGATTTGAGGACATGGCTAAGTGCTGTTCTTGCCAACACAGACACATGCATGGAAGGATTAGAAGAAGGCACCACAAGCAGTGTCAATAATATAAAGAATGCAGTAACCGCTTCCATCAACAAAGTGAACACAATGGTCCAGGATCTCCTAACACAGGTGCACCCTGTTTCGTATAACAGGGTGAGCAAGAGCAAACTTGAGTTTCCTTCTTGGACCGAATCAGAGGATCTTGAGGGTAAAAAGTTGCTAATGGCGGTGGATGCCGTGGTGGCTTTGGATGGGAGTGGGAACTACACACGTGTGAAGGATGCTGTGGAATCAGCGCCCGAGTATAGCATGAAACGTTATGTGATACACATTAAGAAAGGTGTGTATAGTGAGAAAGTTGAGATCCATAGCAAGAAGTGGAACCTTGTGATGATTGGAGATGGAATGGAGAATACTGTTATCACTGGTAACTCGAGTCGTTATTTCCATAATATCACCACATACCGGACTGCAACCTTTGGCAGAGGGTTTATAGCACAAAACATTTCCTTCCATAACACTGCAGGGCCAAGAGGGAGCCAAGCAGTAGCTCTAAGATCACAATCCGATCTCTCAGTCTTCTACCGCTGCGAAATCTCCGGCTACCAAGACAGCCTCTACGCCCACTCCAACCGCCAATTCTACCGAGAGTCCATCATCACCGGCACCGTAGACTTCATCTTCGGCCGCGCCGCCGCAGTCTTCCAGAACTGCACCATACTTGCCAAGAAAGGCTTACCGGAACAAACCAACACCATAACCGCTCAAGCCGCAAAGGACTCCACCTCACCCTCCGGCTTCTCCATCCAATTCAGCAACATCTCTGCACATTCTGAACTTCTACCTTTCTTGAACTGCACAAGAACGTACCTTGGGAGACCATGGAAGGCATATTCGAGAACGGTTTTCATGCAATCTTACATGAGCGAGATGGTGAGCCCGCAAGGGTGGAAAGAATGGAATGACACGTTGTATTTGGACACACTTTACTATGGTGAGTTCATGAATTATGGGCCTGGATCTGGGCTTTCTGAGAGAGTGAAGTGGCCTGGGTATCATGTTATCAATGACTATGATGAAGCTAGTAACTTCACGGTGGCCCAATTTATTCTGGGGGATCTATGGTTGCCATCAACGGGTGTGAATTATGCATCTCGTTTCACTAAATAG 1551 0.4642 MARTPLLFTSLSLLFTQFLFTPFDAVLGSKGSLECLKVSHAEFTNSAKEVVGVLKSVTSILNSEFVRNGGGFVDDHRLSSAVSACLELMDLSSDELSWVVSVSESPKGKHNGTGNLSSDLRTWLSAVLANTDTCMEGLEEGTTSSVNNIKNAVTASINKVNTMVQDLLTQVHPVSYNRVSKSKLEFPSWTESEDLEGKKLLMAVDAVVALDGSGNYTRVKDAVESAPEYSMKRYVIHIKKGVYSEKVEIHSKKWNLVMIGDGMENTVITGNSSRYFHNITTYRTATFGRGFIAQNISFHNTAGPRGSQAVALRSQSDLSVFYRCEISGYQDSLYAHSNRQFYRESIITGTVDFIFGRAAAVFQNCTILAKKGLPEQTNTITAQAAKDSTSPSGFSIQFSNISAHSELLPFLNCTRTYLGRPWKAYSRTVFMQSYMSEMVSPQGWKEWNDTLYLDTLYYGEFMNYGPGSGLSERVKWPGYHVINDYDEASNFTVAQFILGDLWLPSTGVNYASRFTK* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2434 516 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 172 IPR035513 -
Ahy13g2434 516 CDD PMEI-like_4 18 175 - -
Ahy13g2434 516 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Ahy13g2434 516 Pfam Pectinesterase 205 500 IPR000070 GO:0030599|GO:0042545
Ahy13g2434 516 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 165 IPR035513 -
Ahy13g2434 516 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 38 176 - -
Ahy13g2434 516 PANTHER PECTINESTERASE 181 512 - -
Ahy13g2434 516 Pfam Plant invertase/pectin methylesterase inhibitor 45 155 IPR006501 GO:0004857
Ahy13g2434 516 SUPERFAMILY Pectin lyase-like 202 510 IPR011050 -
Ahy13g2434 516 Gene3D - 201 514 IPR012334 -
Ahy13g2434 516 SMART PMEI_2 26 170 IPR006501 GO:0004857
Ahy13g2434 516 PANTHER PECTINESTERASE 38 176 - -
Ahy13g2434 516 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 181 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2434 Ahy-Chr13 56188054 56192424 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2434 33 510 Carbohydrate Esterase AT3G43270 55.020 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2434 K01051 - gmx:100798620 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2434 13 56188054 56192424 Ahy3g2186 3 68762441 68766180 hybridization
Ahy1g1733 1 93414617 93417931 Ahy13g2434 13 56188054 56192424 PCT
Ahy13g2434 13 56188054 56192424 Ahy1g1733 1 93414617 93417931 PCT