Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2428 ATGACGAGAACACAAGAATTAGTGATGATGATAACCTTTTTAGTGTTGGGATGTGCACTAACCATGGCAGAAACAGCAGCTCTAGAGCATGCTCATCACTATGAATGCACTCATACCAGATACCCTAGTCTATGTGATGAAACCTTGAAGGAGTTGATGAGTTCAGGGAATGATAAAAATGTTGATATCATTCTGGCTCTTGTAAACAAAACCATATCTGAAACCAACTTGCCAAGATCATATTTTGCTTCATTTGAGACTCAGGATATTGCTCAACAAGACAAATCATCTTCATCAGTCGGAGGTTATTGTCAAGAGCTAATGGACATGTCAATGAAGAGGTTGGACCAATCCATGAAAGCACTGAGCAAGCCAACAAGAAACAAGGAGGACATCCAAACGTGGCTAAGCGCTTCCCTAACTTTCCAACAAACTTGCAACGACTTCGTACGATCACAAACCTCCAGCGGCGCCGCCACTGCCGTGGTAGACACCATTTCCAAGAAGATGGACTATCTTTCCGCATTAGCCAGTAACTCACTTGCCCTGGTTAACCAAATCACCACGAAGCGAAAAGAAAAGGAAAGCAAAGAGGAATTTCCCGAATGGATTTCTTCGAAAGCAAGAAAACTCCTTCAGGGAGCAGCACCCATAGAAGCGAACGCGGTGGTTGCGCAAGACGGTTCAGGGAACTACAAGACGATTTCTGAGGCCATTGCAGCTGCCACAGGTGGAAGATTTGTGATTTACGTGAAAGCAGGGACTTACAAGGAGAAGATTCGGACAAGTAAGAATGGCATAACGTTGATTGGAGCGGGTAAATATTCGACCGTTATTGTTGGAAGTGAGAGCGTTAAGGGTGGAGCTTCCTTGCCTGACACCGCCACATTCACAATGATGGGGGATGGATTCATTGCAAAAGACATAGGTTTCCACAACAACGCAGGCCCACAAGGCGAACAAGCCGTGGCTCTCTACATAGCTTCAGATCGCTCTGTCCTCTTCCGATGCAGCATTGCAGGCTACCAAGACACCATCTACGCCCACTCCCTCCGCCAATTCTACAGAGAATGCGACATCTACGGCACCATCGACTTCATCTTCGGAAACGCCGCCGCCGTCTTCCAAACCTGCAACATCATGCTCCGCCGCCCTCTCCACGGTGGCTCCAACGCCGTTCTCGCCAACGGAAGAACCGATCCTGGACAGAACACAGGTTTCTCGCTTCACAAGTGTGCCATAACACCAAGCTCCGATTTGTCTCCTGTGAAGCACTCTGTTAATTCTTATCTTGGGAGGCCCTGGAAGGAGTATTCTAGGGCCGTCGTGATAGGGTGTACCATAGACGACGCCATTGCGCAGCAGGGTTGGGTTCAGTGGCCTGGTTATGGAAGCTCGGTCTTGAGGACACTCTATTTTGGTGAGTATGGTAATTCAGGACCTGGTGCTGGAACTGCAAGAAGGGTTCAGTGGCCTGGTTTTCATGTCATGGGTAATGTTGAGGCTTCTAAGTTCACTGTTGGTAACTTTATTGCTGGAAGTTCATGGATTCCTTCCTCCGTCGGTTTCATCTCGGGTCTCTAA 1584 0.4792 MTRTQELVMMITFLVLGCALTMAETAALEHAHHYECTHTRYPSLCDETLKELMSSGNDKNVDIILALVNKTISETNLPRSYFASFETQDIAQQDKSSSSVGGYCQELMDMSMKRLDQSMKALSKPTRNKEDIQTWLSASLTFQQTCNDFVRSQTSSGAATAVVDTISKKMDYLSALASNSLALVNQITTKRKEKESKEEFPEWISSKARKLLQGAAPIEANAVVAQDGSGNYKTISEAIAAATGGRFVIYVKAGTYKEKIRTSKNGITLIGAGKYSTVIVGSESVKGGASLPDTATFTMMGDGFIAKDIGFHNNAGPQGEQAVALYIASDRSVLFRCSIAGYQDTIYAHSLRQFYRECDIYGTIDFIFGNAAAVFQTCNIMLRRPLHGGSNAVLANGRTDPGQNTGFSLHKCAITPSSDLSPVKHSVNSYLGRPWKEYSRAVVIGCTIDDAIAQQGWVQWPGYGSSVLRTLYFGEYGNSGPGAGTARRVQWPGFHVMGNVEASKFTVGNFIAGSSWIPSSVGFISGL* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2428 527 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 189 IPR035513 -
Ahy13g2428 527 TIGRFAM PME_inhib: pectinesterase inhibitor domain 14 187 IPR006501 GO:0004857
Ahy13g2428 527 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 188 IPR035513 -
Ahy13g2428 527 CDD PMEI-like_3 36 189 - -
Ahy13g2428 527 Pfam Plant invertase/pectin methylesterase inhibitor 36 183 IPR006501 GO:0004857
Ahy13g2428 527 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Ahy13g2428 527 SMART PMEI_2 27 183 IPR006501 GO:0004857
Ahy13g2428 527 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 54-RELATED 9 526 - -
Ahy13g2428 527 ProSitePatterns Pectinesterase signature 2. 360 369 IPR033131 -
Ahy13g2428 527 SUPERFAMILY Pectin lyase-like 218 519 IPR011050 -
Ahy13g2428 527 Pfam Pectinesterase 221 513 IPR000070 GO:0030599|GO:0042545
Ahy13g2428 527 Gene3D - 215 527 IPR012334 -
Ahy13g2428 527 PANTHER PECTINESTERASE 9 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2428 Ahy-Chr13 56030966 56036178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2428 10 527 Carbohydrate Esterase AT2G45220 43.321 1.00e-135 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2428 K01051 - gmx:100795439 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2428 13 56030966 56036178 Ahy3g2180 3 68250077 68254919 hybridization