Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2420 ATGAGCCTCCAGTCCCCTCTGAATCCCCAAACAGGATCAAACAGAAGGAGAAGGACTGCTCCGAGTTCCCCTTCCAACGATGTAATCGACGTTGACAATTTCGTCTTCACACCAGTCACTCACAAGGGCACAGACAAGACCACACCCATCTCCGTCGAACACTACGCCCTAGACAGGGACCTCCAGCTCGCAATCGCCGCCTCCCTCGCCGTCCCACTACCTCACCTCATCAACATATCCGACGACGACGACGACGACGACGACGACGTCAGCATCCTCGCTGCAAAACCCGAAAATACCCCTTTCGGGAAACGAAGAAAGAGGGACAACAATGAGAACGAGAAAGGCGAGTCCTCCAACAGCGCCCCACCATTCATCTGCGAAATCTGCACCGAAACAAAGTCATTAGTGGAGTCTTTCTGCGTCACCGGTTGCCATCACTCTTACTGCAACGACTGTGTGGTACTGTATGTTGGGTCGAAGCTTCAGGAGAATGTGATTAACATTCGGTGTCCGGTGCCAGGATGCAAGGGACTTTTAGAGCTGGAAGATTGTCGTGAGATTCTCCCGAAGGAGGTTTTCGATCGATGGGGGATGGCCATGTGTGAGGCTGTGGTTGTCGAGGGTGAGAGATTCTATTGCCCTTTCAAGGACTGCTCAGCGCTTATGATCAACGACGGCGGAGAGTTGGTGAGGCAATCAGAGTGCCCTAACTGTCGGAGGCTGTTCTGTGCCCAGTGCAAGGTTGCTTGGCATGATAGGATTGGCTGCGACGAGTTTCAGACCCTGAATAAGGATGAGAGGGAGAAGGAGGATATTATGCTGATGAATCTGGCTAAAACCAAGAAGTGGAGGAGGTGCCCCATGTGCAAGTATTATGTTGAGAAATCTCAGGGCTGCATGTACATGAAATGCAGATGTGGATATGCCTTCTGTTACAGCTGTGGAGCCCTTTCCAACAATAATACCCACTATTGCAGCAGCTGCAAGCGTTAA 996 0.5151 MSLQSPLNPQTGSNRRRRTAPSSPSNDVIDVDNFVFTPVTHKGTDKTTPISVEHYALDRDLQLAIAASLAVPLPHLINISDDDDDDDDDVSILAAKPENTPFGKRRKRDNNENEKGESSNSAPPFICEICTETKSLVESFCVTGCHHSYCNDCVVLYVGSKLQENVINIRCPVPGCKGLLELEDCREILPKEVFDRWGMAMCEAVVVEGERFYCPFKDCSALMINDGGELVRQSECPNCRRLFCAQCKVAWHDRIGCDEFQTLNKDEREKEDIMLMNLAKTKKWRRCPMCKYYVEKSQGCMYMKCRCGYAFCYSCGALSNNNTHYCSSCKR* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2420 331 Gene3D - 255 331 - -
Ahy13g2420 331 ProSiteProfiles Zinc finger RING-type profile. 127 173 IPR001841 -
Ahy13g2420 331 SUPERFAMILY RING/U-box 200 261 - -
Ahy13g2420 331 ProSitePatterns Zinc finger RING-type signature. 145 154 IPR017907 -
Ahy13g2420 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 208 IPR013083 -
Ahy13g2420 331 MobiDBLite consensus disorder prediction 80 121 - -
Ahy13g2420 331 SMART ring_2 127 174 IPR001841 -
Ahy13g2420 331 SMART ring_2 287 329 IPR001841 -
Ahy13g2420 331 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 28 330 - -
Ahy13g2420 331 SUPERFAMILY RING/U-box 268 330 - -
Ahy13g2420 331 Pfam IBR domain, a half RING-finger domain 278 324 IPR002867 -
Ahy13g2420 331 Pfam IBR domain, a half RING-finger domain 208 257 IPR002867 -
Ahy13g2420 331 MobiDBLite consensus disorder prediction 100 115 - -
Ahy13g2420 331 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 28 330 IPR031127 GO:0004842|GO:0016567
Ahy13g2420 331 SUPERFAMILY RING/U-box 123 204 - -
Ahy13g2420 331 SMART ibrneu5 195 257 IPR002867 -
Ahy13g2420 331 SMART ibrneu5 267 329 IPR002867 -
Ahy13g2420 331 ProSiteProfiles TRIAD supradomain profile. 123 331 IPR044066 -
Ahy13g2420 331 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2420 Ahy-Chr13 55655073 55656801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2420 127 317 C3H Transcription Factor Family AT2G19610 31.841 1.99e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2420 K11975 - twl:120005643 390.578