Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2419 ATGATGTTCCATTCTCAGGGTTCTTCAAGGCATTCTAGTCTTCTTGCTGTCCTGAATGGTGGTAAATCATGTGAGGATAAGCAAAAAGAGAAGCAAGAGGAAGCTTCTGCTTCTGAGAATCAATCACAATACCCCTTTCCGGAGCTTTCTTCCTCTGGTCGTCTTGAGGTGACGGTATTAACTAAACCTACTGTGGATGAACTCGGTCGAGTAATTGAGCAACTGCAGCCAGATTTTGTTTACCTACAAGGTAGACAGCTAGAAGAAAGTGGAGAAATTGGATCTCTTATATGGGAAGATTTTGACCTGTCTAGTCCAGAAGCATTATGTGCATTGTTTTGTTCAAAATTACCTAATACTGTTTATTTGGAAACTCCTAAGGGAGAAAACTTGGCAGAGGCACTCCACTCTAAGGGAATTCCTTACACCATATATTGGGAAAATGACTTTTCAAAGTATGCAGCTTCTCATTTTCATCAAGCTTTGTTCTCAGTGGCACAGAGCACATCGAGTCACACATGGGATGCTTTCCAGCTTGCTCTTGCAACTTTCAGACTATACTGTGTACGAAACAATGTCTTTCCTCCTAACAATAATAAAGGTGGTGGCAAGCTTGGGCCACAAATTCTTGGTGACCCTCCCAATATTGATGTTGGTACAAGTGAACATGATATAGAACAGGAGGAGACTGAACCTGAGAGCATTTCTGCTATAACAATATATGATACTGATGTGAACATGAGATTTCTTGTTTGTGGAGTTAATTGCACTTCGGATGCTTTTTTATTGGGGTCATTAGAGGATGGACTTAATGCTCTCCTATGTACAGAAATACGTGGATGTAAACTTTACAACCGAACAAGTGCTCCACTGCCACCTCTCCAGGCAGCAACATTCTCACGTGGTGTGGTGACCATGCGTTGTGATATATCCACTTGTAGCTCTGCTCATATATCACTTTTGGTGTCTGGTAGTGCAGATACTTGTTTTAATGATCAGCTTTTGGAGAATCATATTAAAAAAGAGCTCATTGAGAAGAGTCAGCTTGTTCAAGCAGTTCCTAATCACGTACGAAGCAAATTGTCTTACTCTGAGCCTCGAAGATCATCCTCAGTAGCCTGTGGATCAAGCGTCTTTGAAGTTTGCATGCGTGTTCCTGCATGGGCTTCACAGATTCTGAGACAGCTGGCTCCTAATGTATCATACCGTAGCCTAGTGATTTTGGGAGTTGCTAGTATTCAAGGATTGCCGGTTGCATCATTTCATAAAGATGATGCTGAACGTCTCCTTTTCTTTTGTACTAGGAAGGGGAAAGAAAACTCTAGTAATGATCCTGTTTTCTCTGGGCATCCTACATGGCTGATGCCTCCAGCACCTAGTCGAAAAAGATTTGAACCATGCTCTAGGAAAAAGTCAGAGGATTTTCGTAGTGATAGACATAAATTAGATTTTGCTGCAATGAGACCAATTCCTCATTCTAATTATCATAAGACTCTTCCCTTTTCGGGATTATCTGAGGGTGAAAGGCATGGGGAACATGGAAAGTCAAATCAGTTACTTGCTCCTATTAGGCATAATGTTGTAGGCATAAATTCTGTACCAAAGAGGAAATCTGCATTAAACACATTTCAAGCTCTTCAGGTTATTTCTTTAAATCCGCTACCTATGAAAAAGCATGGTTGTGACAGAGCTCCGATACGAGTTTGCTCAGAGGAGGAATTCTTGAGGGATGTGATGCAGTTTCTGATCCATCGAGGGCATAATCGCCTAGTCCCACCGGGTGGGATAGCGGAGTTTCCTGATGCCATTCTCAATGCAAAACGCCTTGATCTTTTCAACCTGTATAGAGAGGTGGTTTCAAGAGGAGGCTTTCATGTTGGGAATGGTATCAACTGGAAAGGGCAAGTTTTCTCAAAGATGCGCAATCACACTTTGACAAATAGAATGACGGGTGTTGGCAATACATTGAAGAGACATTATGAGACTTATCTTTTAGAATATGAATTAGCTCACGATGACGTAGATGGGGAGTGCTGCTTGTTGTGTCACAGTAGTGCAGCAGGGGACTGGGTGAACTGTGGTATATGTGGTGAGTGGGCTCACTTTGGATGTGATAAGCGGCAGGGACTTGGGGCATTTAAGGACTATGCTAAAACTGATGGGCTGGAATACGTTTGTCCTCACTGCAGCATTTCAACTTACAGAAAAAAATCTCAAAAAACTCTCTCATTTGACTAG 2238 0.4205 MMFHSQGSSRHSSLLAVLNGGKSCEDKQKEKQEEASASENQSQYPFPELSSSGRLEVTVLTKPTVDELGRVIEQLQPDFVYLQGRQLEESGEIGSLIWEDFDLSSPEALCALFCSKLPNTVYLETPKGENLAEALHSKGIPYTIYWENDFSKYAASHFHQALFSVAQSTSSHTWDAFQLALATFRLYCVRNNVFPPNNNKGGGKLGPQILGDPPNIDVGTSEHDIEQEETEPESISAITIYDTDVNMRFLVCGVNCTSDAFLLGSLEDGLNALLCTEIRGCKLYNRTSAPLPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSADTCFNDQLLENHIKKELIEKSQLVQAVPNHVRSKLSYSEPRRSSSVACGSSVFEVCMRVPAWASQILRQLAPNVSYRSLVILGVASIQGLPVASFHKDDAERLLFFCTRKGKENSSNDPVFSGHPTWLMPPAPSRKRFEPCSRKKSEDFRSDRHKLDFAAMRPIPHSNYHKTLPFSGLSEGERHGEHGKSNQLLAPIRHNVVGINSVPKRKSALNTFQALQVISLNPLPMKKHGCDRAPIRVCSEEEFLRDVMQFLIHRGHNRLVPPGGIAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDKRQGLGAFKDYAKTDGLEYVCPHCSISTYRKKSQKTLSFD* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2419 745 CDD PHD_ARID4_like 678 729 - -
Ahy13g2419 745 CDD ARID 570 668 - -
Ahy13g2419 745 Gene3D - 566 671 IPR036431 GO:0003677
Ahy13g2419 745 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 741 IPR042293 -
Ahy13g2419 745 PANTHER ARID/BRIGHT DNA-BINDING DOMAIN PROTEIN 4 741 - -
Ahy13g2419 745 MobiDBLite consensus disorder prediction 22 49 - -
Ahy13g2419 745 SUPERFAMILY FYVE/PHD zinc finger 664 732 IPR011011 -
Ahy13g2419 745 ProSiteProfiles ARID domain profile. 568 672 IPR001606 GO:0003677
Ahy13g2419 745 Pfam ARID/BRIGHT DNA binding domain 571 668 IPR001606 GO:0003677
Ahy13g2419 745 SUPERFAMILY ARID-like 569 683 IPR036431 GO:0003677
Ahy13g2419 745 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 672 734 IPR013083 -
Ahy13g2419 745 SMART ARID_2 565 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2419 Ahy-Chr13 55645714 55654751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2419 2 741 ARID Transcription Factor Family AT3G43240 64.295 0.0 959
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ahy13g2419 ARID 6.90E-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2419 - - gmx:100808357 1198.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2419 13 55645714 55654751 Ahy13g2419 13 55645714 55654751 ECH