Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2418 ATGGCACCAACATTATTTTCCTTTATCACTCTTTGTCCTGGGAGAAGAGAAAAACTCACATTCGTAGTCCGTAGCAACCAAATAAGAGCAACTATGGCTTCTGACACTGTTCTTCCTTCCATGCCTCTAACCGTTGTTGGATACGTCACTAGTGCCACTCCAACTAAACACACTCACTCGCAGCATCACCGCCGTGCCTTTCTCATAACGGTAACGGTCATCGCCATTGCGGTTACCGTCTTCTTCGCTCTCTACTTCCTCCTCCGTGACCTCAGCCATTACTTCCGCCGTCAAGCTCATCCAATTAGCGTACGCACATCATCTGCGGTCTTCCCCTCCGGTGCTCGCAGCCGAGTATCACCAGAGATCGCTGCGCCTTCCACCGTTGACTCCCTCCCGCTGTTTACGTTCTCTTCTGTTACACGCCGCTCTTCCTCCGTCGTAGACGGTGGTGGAGGAGATTGCGCCATTTGCCTCTCCAGATTCGAGCAACGCGACCTTCTTCGTCTCCTTCCTCTCTGCTGCCACGCGTTCCATGCCGAATGCATTGACGTCTGGCTCCGAACGAATCTCACCTGTCCGCTCTGCCGATCCGCAGTGTTTTTTTCGGAATCCGACGTCGGGAAGATTCTCCGGTCATCGTCCTCCGCCGTCGGCGACAGCTTCCGCCTCGAGATAGGTAGCATCAGTCTCCGTGGAACCACGTCATCCGCCGCCGAAGAATCGCGCATGAGGACATATTCGGTTGGCGAGTTCGATTACCTCGTTGGCGAGGACGCTGAGATTTCTTACAGTCAGGCTCGCCGGAGAACCGATTCCGGCGAGAAAGATGATGCTGAGCCGGTGGAATCATCGGCGCCGAGCTTGGCCAGCGAGGTAGGCAGCAGATGGAGCTGGAAGGATTATTATGATTTGGTTTCAGCTTCGTTAACGTCAACGGCGTCTTTTCGAAGCTCCGGAAGGTTCTTCACTGGGAGTAGCAGGCGAAACGACGTCGTTGCAATTGGTGATGATGAAAGGGAAGCCAACCGTTTTAGGGAAGAAATCAGCGAAGTCTTTCGATGGCTTTCAATGGCATAA 1080 0.5352 MAPTLFSFITLCPGRREKLTFVVRSNQIRATMASDTVLPSMPLTVVGYVTSATPTKHTHSQHHRRAFLITVTVIAIAVTVFFALYFLLRDLSHYFRRQAHPISVRTSSAVFPSGARSRVSPEIAAPSTVDSLPLFTFSSVTRRSSSVVDGGGGDCAICLSRFEQRDLLRLLPLCCHAFHAECIDVWLRTNLTCPLCRSAVFFSESDVGKILRSSSSAVGDSFRLEIGSISLRGTTSSAAEESRMRTYSVGEFDYLVGEDAEISYSQARRRTDSGEKDDAEPVESSAPSLASEVGSRWSWKDYYDLVSASLTSTASFRSSGRFFTGSSRRNDVVAIGDDEREANRFREEISEVFRWLSMA* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2418 359 ProSiteProfiles Zinc finger RING-type profile. 155 197 IPR001841 -
Ahy13g2418 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 35 347 - -
Ahy13g2418 359 CDD RING-H2_PA-TM-RING 154 197 - -
Ahy13g2418 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 204 IPR013083 -
Ahy13g2418 359 Pfam Ring finger domain 154 197 IPR001841 -
Ahy13g2418 359 SUPERFAMILY RING/U-box 137 203 - -
Ahy13g2418 359 MobiDBLite consensus disorder prediction 266 282 - -
Ahy13g2418 359 MobiDBLite consensus disorder prediction 266 287 - -
Ahy13g2418 359 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 35 347 - -
Ahy13g2418 359 SMART ring_2 155 196 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2418 Ahy-Chr13 55617277 55618873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2418 74 198 Rapid Response to Elicitors AT3G05200 38.760 4.90e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2418 K10663 - gmx:100804962 267.314