Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2379 ATGGTGAAGCAGAACAATAACGTGGAGAAGCTTGCGTCAATGGAGCGGAGTGATCTGAAGTACAAAGGTGTAAGGAAGCGAAAGTGGGGGAAGTATGTTTCAGAAATAAGGCTACCAAATAGCCGCCAGAGGATTTGGTTGGGATCCTACGATACCGCCGAGAAGGCGGCGCGTGCATTTGACGCGGCCATGTTTTGCTTACGTGGCGCCGCCGCCAAGTTCAATTTCCCCGGTGCTCCGCCGGAGATCGCCGGCGGCAGGTACATGACCCCTCCCCAAATTCAGGCCGCTGCCGCCCGGTATGCCAATTCTGACCCGGTTCGACCCTGTTCCACCTCGACTGAAACTTCCACGATGTTGTCGGAGGAGACTAAAACGGTGATGCCGGCATCACCATCACCGTCACCGTCCGATGTGACTCTTCAAACGGAATGTGACGTCACAGCCATGAACGGGTCGGGCTCGGATCTTTTTACAACAATAGGGTCGGTTAACCACGATTCTATATTTACGGGTTTTGATGATTTTGGTGGGGATTTCTACCTGCCAGAGATGCCGAGTTACGATTATGAAGAGGAGAATTTGGATGGTTTGATAATTGACGACACTTTCTTGTGGAGTTTCTGA 627 0.5183 MVKQNNNVEKLASMERSDLKYKGVRKRKWGKYVSEIRLPNSRQRIWLGSYDTAEKAARAFDAAMFCLRGAAAKFNFPGAPPEIAGGRYMTPPQIQAAAARYANSDPVRPCSTSTETSTMLSEETKTVMPASPSPSPSDVTLQTECDVTAMNGSGSDLFTTIGSVNHDSIFTGFDDFGGDFYLPEMPSYDYEEENLDGLIIDDTFLWSF* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2379 208 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Ahy13g2379 208 CDD AP2 20 77 IPR001471 GO:0003700|GO:0006355
Ahy13g2379 208 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 5 208 - -
Ahy13g2379 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 208 - -
Ahy13g2379 208 SUPERFAMILY DNA-binding domain 20 77 IPR016177 GO:0003677
Ahy13g2379 208 MobiDBLite consensus disorder prediction 106 138 - -
Ahy13g2379 208 Gene3D AP2/ERF domain 20 78 IPR036955 GO:0003700|GO:0006355
Ahy13g2379 208 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Ahy13g2379 208 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Ahy13g2379 208 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Ahy13g2379 208 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Ahy13g2379 208 MobiDBLite consensus disorder prediction 101 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2379 Ahy-Chr13 52671704 52672715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2379 1 208 AP2-EREBP Transcription Factor Family AT1G74930 45.933 1.45e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy13g2379 AP2 1.00E-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2379 - - gmx:732656 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2379 13 52671704 52672715 Ahy13g2379 13 52671704 52672715 ECH
Ahy13g2379 13 52671704 52672715 Ahy3g2088 3 51005078 51006057 hybridization