Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2362 ATGCAGAGGAAAGCAGCATTGCCGTTGAGGGACGCAAAAAGCGGCAATGCGAACAAGATGAAGGCTCTGTGCGGCAAGGAAGCTTTGGTGAAGCTTCTGCGATGGCATTTTGGGTACCCTGATTTCAGGGGAAAGCAATTGGACGCTATTCAAGCTGTTCTCTCAGGAAGAGATTGTTTTTGTCTTATGCCTACTGGAGGAGGCAAGTCGATGTGTTATCAGATTCCTGCACTGGCCAAAACAGGAATTGTGCTTGTTGTTTGTCCTTTAATAGCCTTAATGGAAAACCAAGTAATGGCACTAAAAGAGAAAGGTATTGATGCTGAATTTCTCTCCTCAACAATATCAACTGATGCAAAAAATAAGATTCATGACGATCTTGATTCTGGAAAACCCTCTACAAGGCTACTATATGTGACTCCAGAGTTGATAGCAACAGCGGGGTTTATGCCAAAGCTGAAAAAGATTTACGCTAGGGGGCTGCTAAGTCTCATTGCCATAGATGAGGCACATTGCATCTCAAGTTGGGGCCATGATTTCAGACCAAGTTACCGTCAACTTTCATTGTTGAGAAGCCACCTACCAGATGTTCCAATATTAGCTCTAACTGCTACTGCTGCTCCTAAGGTTCAGAAGGATGTTGTACAGTCTTTGCATTTGCAAAATCCATTAATTCTTAAATCTTCTTTTAACCGTCCTAATATCTATTATGAAGTTCGATACAAAGATCTTCTGGATGATGCTTATGCTGATTTATCTAATACATTAAAATCTAAGGGAGATGTTTGTGCAATAGTTTACTGTCTTGAACGTTCAATGTGTGATGAATTGTCAGCTCATCTATCCCAAAATGGCATTTCCTGTGCTGCTTATCATGCAGGATTGAATAAGAAAATGCGAACGTCTGTGTTAGATGAGTGGATTTCTTCCAAAATACAAGTTGTTGTTGCCACTGTTGCTTTTGGAATGGGGATTGATAGAAAGGATGTAAGAATTGTATGCCACTTCAATATTCCCAAGTCAATGGAAGGATTTTATCAAGAGTCAGGCAGAGCAGGTCGTGATCAACTGCCCTGTACAAGTCTGCTGTACTACGGGGTAGATGATCGCAAAAGAATGGAATTCATATTAAGAAATTCAGGAAGCAAGAAATCTCAATCATCTACTTCACAGGAAGAATCATCAAAAAAGTCAATGGCTGACTTTACCCAGATGGTTGAATATTGTGAAGGATCTGGATGTCGTAGGAAAAGGATTCTCGAGAGTTTTGGGGAGAAGGTTACTGCATCCCTGTGTGAAAAAACATGTGATGCTTGCAGACATCCAAACTTAGTTGCCCGAAATTTGGAGGATCTGACAACTGCAATTGCTCTGCGCCAGAAAGGCAGTTCTTCTCGAATTTTCATCACCAGTTCTTCTGATGCAATCAACGGAGAACAGTTATCTGAATTCTGGAATCGTGGTGATGAAGCAATTGGCTCAGATGATGATATATCTGACTCCGATGATGGTAATGAGGTTGTCAACAACCTAACCAAGTCAAAGCTTCATTCTAAAGTGGGAGTAAATGAAAAGCTTGCTATGTTAGAACGTGCAGAAGAAAACTTCTATCGAAATGAGAAAGCTAAGAAACAGAGTAAAGTTGACAAGAATGCTATTTCTGATGCAATGCGAGAATCAAGCAGGCAAAGATTACAAAATGCTCTGAAACAGGCTCAGCAGCGACTTGACAACTTAAAGATTGAGTTGGAGACATCAGCATCTTTCCTTGAAGATGAATGCTACAAGAAATATAGCAAAACTGGCAAATCATTCTATTATTCACAAGTGGCGAGCACGGTTAGGTGGCTGGCAACGACAAGTTCCGTTGATATGTTGAACCGACTTGGCGCAATGAAGGAATCTACATCAATGGATGCTGTTCCTGAAGCTGAAGGTCGCACCCCACCACATGCTATAGATCATTCTGGAAAGGAAGGTACAAGTAATGAACTCTCGGGCAATGCTCAGTCAGAAATTTTGCCTTGCGGTGACAGGGGCATGCCAATAGAAAGTTCTTCCGTTAATACAAAGCTGCCACAGATTCCGTCGTTCTATGAATTTGTTAATAGTAGGAAAACAAAAGGTGACCAATTAGATGACACAAAAAAGAACTCATCTAGAGTAGAAAAGAAAATGAGAGTACAGTAG 2190 0.4096 MQRKAALPLRDAKSGNANKMKALCGKEALVKLLRWHFGYPDFRGKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKTGIVLVVCPLIALMENQVMALKEKGIDAEFLSSTISTDAKNKIHDDLDSGKPSTRLLYVTPELIATAGFMPKLKKIYARGLLSLIAIDEAHCISSWGHDFRPSYRQLSLLRSHLPDVPILALTATAAPKVQKDVVQSLHLQNPLILKSSFNRPNIYYEVRYKDLLDDAYADLSNTLKSKGDVCAIVYCLERSMCDELSAHLSQNGISCAAYHAGLNKKMRTSVLDEWISSKIQVVVATVAFGMGIDRKDVRIVCHFNIPKSMEGFYQESGRAGRDQLPCTSLLYYGVDDRKRMEFILRNSGSKKSQSSTSQEESSKKSMADFTQMVEYCEGSGCRRKRILESFGEKVTASLCEKTCDACRHPNLVARNLEDLTTAIALRQKGSSSRIFITSSSDAINGEQLSEFWNRGDEAIGSDDDISDSDDGNEVVNNLTKSKLHSKVGVNEKLAMLERAEENFYRNEKAKKQSKVDKNAISDAMRESSRQRLQNALKQAQQRLDNLKIELETSASFLEDECYKKYSKTGKSFYYSQVASTVRWLATTSSVDMLNRLGAMKESTSMDAVPEAEGRTPPHAIDHSGKEGTSNELSGNAQSEILPCGDRGMPIESSSVNTKLPQIPSFYEFVNSRKTKGDQLDDTKKNSSRVEKKMRVQ* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2362 729 CDD SF2_C_RecQ 232 365 - -
Ahy13g2362 729 Pfam RecQ zinc-binding 369 440 IPR032284 -
Ahy13g2362 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 377 IPR027417 -
Ahy13g2362 729 PANTHER DNA HELICASE RECQ FAMILY MEMBER 6 713 - -
Ahy13g2362 729 MobiDBLite consensus disorder prediction 379 398 - -
Ahy13g2362 729 MobiDBLite consensus disorder prediction 706 729 - -
Ahy13g2362 729 MobiDBLite consensus disorder prediction 703 729 - -
Ahy13g2362 729 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 244 396 IPR001650 -
Ahy13g2362 729 SMART ultradead3 38 240 IPR014001 -
Ahy13g2362 729 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 3 6 713 - -
Ahy13g2362 729 Gene3D - 8 231 IPR027417 -
Ahy13g2362 729 CDD DEXHc_RecQ 31 231 - -
Ahy13g2362 729 Pfam Helicase conserved C-terminal domain 252 354 IPR001650 -
Ahy13g2362 729 Coils Coil 562 582 - -
Ahy13g2362 729 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 32 453 IPR004589 GO:0004386|GO:0006310
Ahy13g2362 729 MobiDBLite consensus disorder prediction 635 689 - -
Ahy13g2362 729 Gene3D - 232 458 IPR027417 -
Ahy13g2362 729 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 224 IPR014001 -
Ahy13g2362 729 Pfam DEAD/DEAH box helicase 46 212 IPR011545 GO:0003676|GO:0005524
Ahy13g2362 729 SMART helicmild6 275 356 IPR001650 -
Ahy13g2362 729 MobiDBLite consensus disorder prediction 378 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2362 Ahy-Chr13 51745215 51752655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2362 35 379 Eukaryotic Initiation Factors Gene Family AT3G19760 22.888 6.90e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2362 - K10901 gmx:100819601 1109.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2362 13 51745215 51752655 Ahy13g2362 13 51745215 51752655 ECH
Ahy13g2362 13 51745215 51752655 Ahy3g2069 3 49435131 49442705 hybridization