Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2327 ATGATGAACAACAGTAGCAGCAGCAGTAGTAGTAGGAACAGTAGGTTTCCTTTCACCCCATCACAGTGGCAAGAACTTGAACACCAAGCTCTAATATACAAATACATGGCTTCAGGTACCACTGTCCCTCCTGATCTTCTCTTCACTCTCAAAAGAAGCCATTTCAATTTGCCTCATCACCAACCAGCTCAACAACAACACTTTGGATGGAACTATCTTGAAATGGGTTTGGGAAGAAAAATAGACCCGGAACCAGGGAGGTGTAGAAGAACAGATGGAAAAAAATGGAGGTGCTCAAAAGAGGCATACCCAGATTCAAAGTACTGTGAAAGGCACATGCACCGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAACTTTTGAAAACAACAACAAACACAAGCAATAGTGCTTCTTCAGCAACAACCCACACCATCATCTCATCATCATCAATCACTAAAACTAATGAGCACCCTCAACAACGTTCTTGCTATAATAATGGTTCAAATCTTCTTCATCAGCATTCCTTTGTCTTCAATTCCCACACTCCATCAAGGTCATCAACATCTGCTGTTGCTTTTTCATTTCCAGACAACACTGCTCCCTCCAGGTACGTCTATGGAGTGAAAGAGGAAGCGGATGAACGTGCTTTCTTCAAAGAACCTTCTAGCACATTGAAAAGCTTCTCTGGATCCTCCATGGACGATTCATGGCAACTCACACCATTGACCATAAGCACCTCATCTTCTTCTTCCTCCACAAAACAGAGGAGTTGCACAAGTTTATCCAACAATAGTGACTACTCGTACTTGCAACTTGAGAGCCTCAATGAGCGCTCAAAAAATCAAGAACAAGATCAGAAGACTACTGTTCATAGCTTCTTTGATGAATGGCCCCACAAAGGCAGAGGATTTGATTCCGATGACAAATGTTCTTCCACAACCAAATTATCAATTTCCATTCCATCAACATCTTTTCATGACTTTCCCGTCCTTCAGTTCAAGAACCCACCTGGCTGCTGA 1020 0.4265 MMNNSSSSSSSRNSRFPFTPSQWQELEHQALIYKYMASGTTVPPDLLFTLKRSHFNLPHHQPAQQQHFGWNYLEMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELLKTTTNTSNSASSATTHTIISSSSITKTNEHPQQRSCYNNGSNLLHQHSFVFNSHTPSRSSTSAVAFSFPDNTAPSRYVYGVKEEADERAFFKEPSSTLKSFSGSSMDDSWQLTPLTISTSSSSSSTKQRSCTSLSNNSDYSYLQLESLNERSKNQEQDQKTTVHSFFDEWPHKGRGFDSDDKCSSTTKLSISIPSTSFHDFPVLQFKNPPGC* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2327 339 Pfam WRC 83 125 IPR014977 -
Ahy13g2327 339 PANTHER GROWTH-REGULATING FACTOR 6 13 323 - -
Ahy13g2327 339 Pfam QLQ 17 49 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ahy13g2327 339 ProSiteProfiles QLQ domain profile. 17 52 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ahy13g2327 339 SMART QLQ_2 16 52 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ahy13g2327 339 ProSiteProfiles WRC domain profile. 82 126 IPR014977 -
Ahy13g2327 339 PANTHER - 13 323 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2327 Ahy-Chr13 49987005 49990764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2327 2 125 GRF Transcription Factor Family AT3G13960 61.538 1.62e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Ahy13g2327 WRC 6.90E-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2327 - - gmx:100814271 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2327 13 49987005 49990764 Ahy3g2039 3 46790421 46794088 hybridization
Ahy11g3163 11 149197746 149200399 Ahy13g2327 13 49987005 49990764 PCT
Ahy1g1790 1 94207405 94209468 Ahy13g2327 13 49987005 49990764 PCT
Ahy13g2327 13 49987005 49990764 Ahy11g3163 11 149197746 149200399 PCT
Ahy13g2327 13 49987005 49990764 Ahy1g1790 1 94207405 94209468 PCT