Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2320 ATGTTAGATAGTGATCTCTTATTACTCACAGGTTACAGAACACAACTTTTTTGTGTATTTGTGAGAGATCATCAAAGACATACAATCATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGGGAAGAAGCCCTTGTTGCTCAAAGGAGGGTTTGAACCGCGGTGCCTGGACAGCTCAAGAAGACAAAATCCTCCGAGATTATATCAGTCTCCATGGCCAAGGAAAATGGAGGAACCTTCCTCAAAGAGCAGGGTTGAAACGTTGTGGGAAAAGTTGCAGGCTTCGATGGTTAAATTATCTGAGGCCAGATATTAAAAGAGGAAACATATCAGAAGACGAAGAAGAACTTATCATAAGACTTCACAAGCTACTTGGAAACAGATGGTCACTTATAGCCGGGAGGCTTCCAGGAAGAACAGACAATGAGATCAAGAATTATTGGAACACAAATTTAGGCAAAAGAGTTAGAGATCTTCAAACAATAAGCAGTGCATCTTCTCAGCAACCCAATGAAACAAATAATAACAACAACATTCAGAAACCAACAACAATGCCTCCTTCAACCAATAAAGTGGTCTCCACAACCACTCCCTCTCTGTCACCGTTAAACGATTCACATTCTCTTCTCGTCCGTACAAAAGCTTCTAAGTGCTCTAAGTCATTATTCTTGGATCATTCATCAACAACAACTACTTCACTGCAGCAGAACAAGACTTCTAGTAGTAATAATAATAATAACAATAGCCACGGACTCGATGAAACCGCCGCCGATCATGTTTTGCTGCCACCGCCGGGGTTGTTGCTTCCGAGGAACGGTGACAACAACAACAACAACACCATGGTGATGATGATGATGGAGATGGGTACCAATTCAGAAGAATACAAAGAGATCTCGACAACAGAATTGCTCTTGGATTTTGACGTTGGCGATATTTGCTTGCATTCTCTTCTGAACTCGGATTTCGAGGATATATGCGATTTCGGTTACAACAACAGTAACAGTAACTGCGAGGATCTGTTTGGATTCTCACCGCCGGAGCAGATGCAGCTGGATTCTTCTGATGAAGTTCTAAAGGAAGCCACCGTACCAAGCAACTTCCCTGACGAAACAAATAATATTGTAGAAAACATACAGTTTCTGTGA 1155 0.4017 MLDSDLLLLTGYRTQLFCVFVRDHQRHTIIIIIIIIIIIIIIIMGRSPCCSKEGLNRGAWTAQEDKILRDYISLHGQGKWRNLPQRAGLKRCGKSCRLRWLNYLRPDIKRGNISEDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKRVRDLQTISSASSQQPNETNNNNNIQKPTTMPPSTNKVVSTTTPSLSPLNDSHSLLVRTKASKCSKSLFLDHSSTTTTSLQQNKTSSSNNNNNNSHGLDETAADHVLLPPPGLLLPRNGDNNNNNTMVMMMMEMGTNSEEYKEISTTELLLDFDVGDICLHSLLNSDFEDICDFGYNNSNSNCEDLFGFSPPEQMQLDSSDEVLKEATVPSNFPDETNNIVENIQFL* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2320 384 MobiDBLite consensus disorder prediction 166 208 - -
Ahy13g2320 384 SUPERFAMILY Homeodomain-like 55 151 IPR009057 -
Ahy13g2320 384 Pfam Myb-like DNA-binding domain 57 104 IPR001005 -
Ahy13g2320 384 Pfam Myb-like DNA-binding domain 110 155 IPR001005 -
Ahy13g2320 384 CDD SANT 59 104 IPR001005 -
Ahy13g2320 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 159 IPR017930 -
Ahy13g2320 384 ProSiteProfiles Myb-like domain profile. 52 104 IPR001005 -
Ahy13g2320 384 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 44 262 - -
Ahy13g2320 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 104 IPR017930 -
Ahy13g2320 384 ProSiteProfiles Myb-like domain profile. 105 155 IPR001005 -
Ahy13g2320 384 SMART sant 56 106 IPR001005 -
Ahy13g2320 384 SMART sant 109 157 IPR001005 -
Ahy13g2320 384 MobiDBLite consensus disorder prediction 231 256 - -
Ahy13g2320 384 CDD SANT 114 155 IPR001005 -
Ahy13g2320 384 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 44 262 - -
Ahy13g2320 384 Gene3D - 114 187 - -
Ahy13g2320 384 Gene3D - 57 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2320 Ahy-Chr13 49754471 49757631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2320 44 212 MYB Transcription Factor Family AT4G38620 54.070 4.24e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy13g2320 Myb_DNA-binding 2.30E-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2320 K09422 - gmx:100802704 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2320 13 49754471 49757631 Ahy13g2320 13 49754471 49757631 ECH
Ahy13g2320 13 49754471 49757631 Ahy3g2033 3 46235904 46238437 hybridization
Ahy13g2320 13 49754471 49757631 Ahy11g3160 11 149167157 149168948 PCT
Ahy13g2320 13 49754471 49757631 Ahy1g1794 1 94234285 94236385 PCT