Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2308 ATGAGCGATGTTCTAAGCCCCTTCACAGTGTCACCCCCTCCTCCATCATCTTCCACCCCAAGCAACAAGAACGGCATGCCGATGTTGTACTATGGCCTTGTTGTGGTTGGAACCGCAGCCATAGTGCTTGCCATATACAACCTCATCATCATCAAACGCTGCAACCGCCGCCGCAACGCGCCGGATCAGTCTCCAACAACACCAAATAATAATAATAGGTTGATTCAGGTGGTTGTTACTACCACTAATTCCGGTGAAGGAGTTAGAAGCTTTGAAAACAATAATTACTATGCAGCATCGCAAAGGAACTACTTGCTCTCAAGTTTCAAGTACAAGAAAGAAAAAATGACATCAGCAACATCAAAGGAAGGTTCTTTCGTTTTTGTTGATGGTGGTAGCGATGAGTGCCCTGTTTGTTTATCAGCGTTTGAAGAAGGAGAGGAAGTGAGGAAGCTTCCAAGGTGCAAGCACTCGTTTCATGCTCTTTGTATAGACATGTGGCTTTACTCTCACTTTGATTGCCCAATTTGTAGAACACCTGTTGGGCTCTTTTCCCATCCTTTTCCCGCCGAGAATTCTCGCAGCGGCGGCGGCATCTCTGCTTGA 606 0.4637 MSDVLSPFTVSPPPPSSSTPSNKNGMPMLYYGLVVVGTAAIVLAIYNLIIIKRCNRRRNAPDQSPTTPNNNNRLIQVVVTTTNSGEGVRSFENNNYYAASQRNYLLSSFKYKKEKMTSATSKEGSFVFVDGGSDECPVCLSAFEEGEEVRKLPRCKHSFHALCIDMWLYSHFDCPICRTPVGLFSHPFPAENSRSGGGISA* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2308 201 Pfam Ring finger domain 134 178 IPR001841 -
Ahy13g2308 201 CDD RING-H2_EL5_like 135 178 - -
Ahy13g2308 201 SUPERFAMILY RING/U-box 135 184 - -
Ahy13g2308 201 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Ahy13g2308 201 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 11 186 - -
Ahy13g2308 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 183 IPR013083 -
Ahy13g2308 201 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 186 IPR044675 -
Ahy13g2308 201 SMART ring_2 136 177 IPR001841 -
Ahy13g2308 201 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2308 Ahy-Chr13 48388434 48389039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2308 33 187 C3H Transcription Factor Family AT5G17600 33.974 2.48e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2308 - - aip:107634439 406.757