Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2301 ATGCTGACGTGCATAGCTCGGCCGAAGAAACTCGGGGAAGACTCACTGAGTCACCCGGACGATCCCAATTCCAGCATCGGAAAGAATCAATCCGTCAAGTCCATCACCTCTCAGTTAAAGGATATGGCGTTGAAGGCGTCGGGTGCGTACAAGAACTGCAGTCCGTGCGCGCCGCCGAGTCGACTCAGGACAGCCAGTGGAGTGGGCGGTGCCAGTATTGGAAGCGGTGGAGACTCGGATGGGGACTCGGATCGGTTCCGGTGGTCGTACAGACGGACAGGGAGCTCAAGCTCGTCGGCGGGGACAAGGACAGGGTGGGGAAAGGAGATGGAGGCGAGGCTTAAGGGGATATCGAGCGGCGAGGGGACGCCGAGCTCCGCCGGAGGGAGCGGGCGGAGGGCGGAGCCGGTGGTGGTGCTAGTGGAGGAGAACGAGCCGAAGGAGTGGGTGGCGCAGGTGGAGCCTGGCGTCTTGATCACGTTCGTGTCGCTTCCCCGTGGCGGGAACGACCTCAAGCGCATACGATTCAGTCGGGAGATATTTAACAAATGGCAAGCTCAAAGATGGTGGGCAGAGAACTATGACAAGGTCATGGAACTTTACAATGTTCAAAGGCTTAACCGCCAAGCTTTCCCTCTTCCAACTCCACCACGGTCTGAAGATGAGAGTTCAAAGCGTGAATCAATAGAAGACAGCCCTGTAACACCTCCACTAACCAAGGAACGGCTACCTCGAAATTTGTACCGCCCAACAGGGGTGGGAATGGGATACTCATCCTCAGATTCCTTTGATCATCAGTCAATGCAATCCCGGCATTACAATGATTCAAACGGTCTGAACTCAACCCCAAAGGTTTCAACCATTAGCGCTGCCAAGACAGAGATGTCATCGATGGATGCTTCTATAAGTAGCTCATCCAGAGAAGTGGACCATTCCGGGGAACTATCAATGAGCAATGCTAGTGACTTGGAGACTGAATGGGTTGAGCAGGATGAACCTGGAGTCTACATTACCATTAGAGCACTCCCAGGTGGCAAACGGGAGCTCAAACGAGTGAGGTTCAGCCGAGAAAAATTCGGGGAGATGCATGCTCGACTTTGGTGGGAGGAGAATCGTGCCAGAATACATGAACAATACTTGTAA 1143 0.5407 MLTCIARPKKLGEDSLSHPDDPNSSIGKNQSVKSITSQLKDMALKASGAYKNCSPCAPPSRLRTASGVGGASIGSGGDSDGDSDRFRWSYRRTGSSSSSAGTRTGWGKEMEARLKGISSGEGTPSSAGGSGRRAEPVVVLVEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREIFNKWQAQRWWAENYDKVMELYNVQRLNRQAFPLPTPPRSEDESSKRESIEDSPVTPPLTKERLPRNLYRPTGVGMGYSSSDSFDHQSMQSRHYNDSNGLNSTPKVSTISAAKTEMSSMDASISSSSREVDHSGELSMSNASDLETEWVEQDEPGVYITIRALPGGKRELKRVRFSREKFGEMHARLWWEENRARIHEQYL* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2301 380 PANTHER PROTEIN BREVIS RADIX-LIKE 4 1 380 - -
Ahy13g2301 380 Pfam Transcription factor regulating root and shoot growth via Pin3 324 379 IPR013591 -
Ahy13g2301 380 Pfam Transcription factor regulating root and shoot growth via Pin3 147 201 IPR013591 -
Ahy13g2301 380 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 380 IPR044532 -
Ahy13g2301 380 MobiDBLite consensus disorder prediction 210 283 - -
Ahy13g2301 380 MobiDBLite consensus disorder prediction 18 41 - -
Ahy13g2301 380 MobiDBLite consensus disorder prediction 1 107 - -
Ahy13g2301 380 MobiDBLite consensus disorder prediction 90 104 - -
Ahy13g2301 380 ProSiteProfiles BRX domain profile. 147 202 IPR013591 -
Ahy13g2301 380 Pfam Transcription factor BRX N-terminal domain 30 56 IPR027988 -
Ahy13g2301 380 MobiDBLite consensus disorder prediction 253 283 - -
Ahy13g2301 380 ProSiteProfiles BRX domain profile. 325 380 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2301 Ahy-Chr13 47871527 47879085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2301 1 380 Major Intrinsic Protein MIP AT1G31880 44.156 9.29e-90 273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2301 13 47871527 47879085 Ahy3g2016 3 45129558 45137465 hybridization
Ahy11g3150 11 149117581 149121910 Ahy13g2301 13 47871527 47879085 PCT
Ahy1g1805 1 94306152 94310277 Ahy13g2301 13 47871527 47879085 PCT
Ahy13g2301 13 47871527 47879085 Ahy11g3150 11 149117581 149121910 PCT
Ahy13g2301 13 47871527 47879085 Ahy1g1805 1 94306152 94310277 PCT