Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2298 ATGAAACCGTTTCTCTCGCTCAATTATCCGGATACGGCATTCGATTGTGCACAAATTGAATGCGATTACTCGATGGCTCATGGTTCCTATCCTTACGAAGATCCCTTTTTCGCCGGTTCATTAATTGCTTATGGACCACAGGGTATTGTAAGTGCACTTGGGATTTCGGATTTTGGTGATAATCAACCCCAAATGTTGCCCCAGATGCTGGGATTGCAATCCACTAGAGTTGCTTTACCACTTGATCTTGCCGAGGATGGCCCCGTTTATGTCAATGCAAAACAATACCACGGTATACTGAGAAGGCGTCAGTCGCGAGCAAAGCTTGAGGCTCAGAACAAACTTATAAAAAATCGTAAGCCATATCTACACGAGTCTCGCCATCGCCATGCTTTGAATAGGGTGAGGGGTTCCGGGGGACGATTCCTGAGCACCAAACAGTTTGAACAATCTAATGCTGAAGTTGTCACCGGCGCGCATTCTAGCTCAGACACCAGCAAGGATGCATCCAAGGTTGAAAGTCATCTCTTGAGAACCGCTGGCAATGCATCTTCAATCACAACCTGCTCGGATCGGACGTCCTTGTCAAGCAACAGTGTTAGCAGGCAGCCGGAAGCGCAGCTGTTCCTGGCAGGCCCTGCAAACTTGGGCCGAGCTCCAGTGGTCCGGTGA 672 0.4911 MKPFLSLNYPDTAFDCAQIECDYSMAHGSYPYEDPFFAGSLIAYGPQGIVSALGISDFGDNQPQMLPQMLGLQSTRVALPLDLAEDGPVYVNAKQYHGILRRRQSRAKLEAQNKLIKNRKPYLHESRHRHALNRVRGSGGRFLSTKQFEQSNAEVVTGAHSSSDTSKDASKVESHLLRTAGNASSITTCSDRTSLSSNSVSRQPEAQLFLAGPANLGRAPVVR* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2298 223 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 88 142 IPR001289 GO:0003700|GO:0006355
Ahy13g2298 223 MobiDBLite consensus disorder prediction 153 172 - -
Ahy13g2298 223 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 205 IPR001289 GO:0003700|GO:0006355
Ahy13g2298 223 ProSitePatterns NF-YA/HAP2 subunit signature. 90 110 IPR018362 GO:0003677|GO:0016602
Ahy13g2298 223 Gene3D - 85 147 - -
Ahy13g2298 223 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 1 205 - -
Ahy13g2298 223 SMART cbf3 84 145 IPR001289 GO:0003700|GO:0006355
Ahy13g2298 223 PRINTS CCAAT-binding transcription factor subunit B signature 88 110 IPR001289 GO:0003700|GO:0006355
Ahy13g2298 223 PRINTS CCAAT-binding transcription factor subunit B signature 119 142 IPR001289 GO:0003700|GO:0006355
Ahy13g2298 223 ProSiteProfiles NF-YA/HAP2 family profile. 85 145 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2298 Ahy-Chr13 47820298 47823534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2298 17 151 CCAAT-HAP2 Transcription Factor Family AT1G17590 55.147 8.12e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Ahy13g2298 CBFB_NFYA 2.30E-27 No_clan