Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2294 ATGGACGGTGGCGGACACTACAACCCTCGCACCGTTGAGGAAGTTTTCCGCGACTTCAAGGGTCGCAGAGCTGCTATGATCAAAGCCCTCACCACTGATGTTGAGGAGTTTTACCGGCAGTGTGATCCAGATAAGGAGAACCTCTGTCTGTATGGATACCCCACTGAACAGTGGGAAGTTAATTTACCCGCTGAAGAAGTTCCTCCTGAACTTCCCGAGCCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGAGAAGGACTGGCTAACTTTAGTTGCAGTTCACAGTGATGCATGGCTAATTGCAGTGGCTTTCTACTTTGGAGCAAGATTTGGTTTTGACAGAGCTGACAGGAAACGTCTATTCACTATGATTAATGATCTGCCAACAATTTTTGAGGTTGTGACTGGAACTGCAAAGAAACAGTCGAAGGAAAAGTCATCAGTTTCAAACCACACAAACAGCAAATCAAAATCTAGTTCAAAAGGGCGAGGATCTGAATCGGTTAAGCAAACAAAGCAAGCAAAGGAAGAGGATGAGGGTGCAGAGGAATATGAGGAGGAGCATGGGGAGACCCTGTGTGGTGCATGTGGGGAGCTCTATGCAGCTGATGAGTTTTGGATTTGCTGCGACATATGTGAGAGGTGGTTCCATGGCAAGTGTGTGAAGATCACGCCTGCTCGGGCTGAGCACATTAAACAGTACAAATGCCCCACTTGCAGCAACAAGAGAGCACGGCCTTGA 750 0.4773 MDGGGHYNPRTVEEVFRDFKGRRAAMIKALTTDVEEFYRQCDPDKENLCLYGYPTEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLTLVAVHSDAWLIAVAFYFGARFGFDRADRKRLFTMINDLPTIFEVVTGTAKKQSKEKSSVSNHTNSKSKSSSKGRGSESVKQTKQAKEEDEGAEEYEEEHGETLCGACGELYAADEFWICCDICERWFHGKCVKITPARAEHIKQYKCPTCSNKRARP* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2294 249 MobiDBLite consensus disorder prediction 145 170 - -
Ahy13g2294 249 MobiDBLite consensus disorder prediction 145 186 - -
Ahy13g2294 249 Pfam PHD-finger 196 245 IPR019787 -
Ahy13g2294 249 SUPERFAMILY FYVE/PHD zinc finger 186 246 IPR011011 -
Ahy13g2294 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 244 IPR013083 -
Ahy13g2294 249 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 249 - -
Ahy13g2294 249 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Ahy13g2294 249 SMART PHD_3 195 243 IPR001965 -
Ahy13g2294 249 CDD PHD_AL_plant 195 245 IPR044104 -
Ahy13g2294 249 PANTHER CPG BINDING PROTEIN 3 249 IPR045104 GO:0006355|GO:0042393
Ahy13g2294 249 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Ahy13g2294 249 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2294 Ahy-Chr13 47701296 47704297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2294 1 248 Alfin-like Transcription Factor Family AT3G42790 74.502 7.10e-123 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Ahy13g2294 Alfin 1.00E-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2294 - - jre:109009410 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2294 13 47701296 47704297 Ahy13g2294 13 47701296 47704297 ECH
Ahy13g2294 13 47701296 47704297 Ahy3g2013 3 44823252 44826112 hybridization