LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy13g2281	ATGGAGATAAATGATCATCGAGAAGATGAAAGGGAAGGGAAGGTGAAAGAAGCCATGGCAGTTGACGACGACGAAGAAAAAGAAGATGACGACGAGAAAGAAGAAGAGGAAGAGGAAGAGGAAGAAGGAACCACAGGTTCGAGTTTGACCATGGAGAGGGTTGCTGTAGCTAAGGAATTCATTGAAAACCATTACAAGGCTCATATGAAACATATCCAAGATCGCAAAGAAAGGCGTTTAGTACTAGAAAAGAAGCTAGCATCTTCTCATGTACCAGAAGAGGAACAAATCAATCTATTAAAAGATTTAGAGCGAAAGGAGACTGAGTATATACGATTAAAAAGAAACAAAATATGTGTTGATGATTTTGACCTTCTAACAATTATTGGCAGAGGAGCCTTTGGCGAGGTAAGACTCTGTCGGGAAAAGAAATCAGGTCACATATACGCCATGAAAAAGTTGAAGAAGTCTGAAATGCTTCGTAGGGGACAGGTTGAGCATGTTAGAGCGGAAAGGAATGTACTTGCAGAAGTTGCAAGTGAGTGCATTGTGAAGCTGTATTACTCTTTTCAAGATGATGAATACTTATATCTAATAATGGAGTATTTACCTGGTGGTGATATAATGACTTTGCTTATGAGAGAGGAAATTTTGACCGAAACTATGGCGAGATTTTACATTGCGCAAACTGTTTTGGCAATAGAGTCTATTCATAAACACAATTACATTCATCGAGACATAAAACCTGACAACCTTCTATTGGACAAAAATGGTCATATGAAGCTCTCTGATTTTGGTCTTTGCAAGCCACTTGACTGTTCTAATTTATCATCTATAAATGAAAATGAAGTTCTAGATGATGAGAACTTGAATGATACCATGGACATTGATGGATCCAACCCAAATAAAAGAAATGGAAGGCGCTGGAAAAGTCCCCTTGAACAACTTCAACATTGGCAAATGAATCGGAGGAAGTTGGCATTTTCCATGGTTGGTACTCCGGACTATATTTCTCCCGAGGTGCTTCTAAAAAAAGGCTATGGTGCAGAATGTGACTGGTGGTCTCTTGGTGCTATATTGTATGAGATGCTTATTGGTTATCCTCCATTTTATTCTGATGATCCTATAACAACATGTAGAAAGATTGTGCATTGGAAAAATCACTTAAAATTTCCAGTTGAGATAAGGTTGAGTCCAGAAGCAAGAGATCTAATATGTAGGTTACTTGTTGATGCTCCACAAAGGCTTGGTACTAATGGAGCATATGAAATTAAAACTCATCCTTGGTTCAAAAATGTTGAATGGGATAGGCTTTATGAAATGGAGGCAGCATTTATACCACAGGTCGATGGAGAGCTTGACACTCAAAATTTTATGAAATTTAATGAGGTTGAAGCAGAACAACCAAAACCAACTAGAAGTGCATCAGGACCGATCAGAAAAAAGTTGTTAACTCCTCAAGATCTCAGTTTTGTTGGCTATACATATAAGAATTTTGCTGCTGTTAAGGGAACACGCCATTCTATTGATATGTTGTCTTTGTCAACCCCACAGCGCACATCATCCATTGACTCTACACAAAGTGATACTGCAATTGACTATTCCACATGA	1611	0.3836	MEINDHREDEREGKVKEAMAVDDDEEKEDDDEKEEEEEEEEEGTTGSSLTMERVAVAKEFIENHYKAHMKHIQDRKERRLVLEKKLASSHVPEEEQINLLKDLERKETEYIRLKRNKICVDDFDLLTIIGRGAFGEVRLCREKKSGHIYAMKKLKKSEMLRRGQVEHVRAERNVLAEVASECIVKLYYSFQDDEYLYLIMEYLPGGDIMTLLMREEILTETMARFYIAQTVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCSNLSSINENEVLDDENLNDTMDIDGSNPNKRNGRRWKSPLEQLQHWQMNRRKLAFSMVGTPDYISPEVLLKKGYGAECDWWSLGAILYEMLIGYPPFYSDDPITTCRKIVHWKNHLKFPVEIRLSPEARDLICRLLVDAPQRLGTNGAYEIKTHPWFKNVEWDRLYEMEAAFIPQVDGELDTQNFMKFNEVEAEQPKPTRSASGPIRKKLLTPQDLSFVGYTYKNFAAVKGTRHSIDMLSLSTPQRTSSIDSTQSDTAIDYST*	537

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy13g2281	536	Coils	Coil	21	41	-	-
	Ahy13g2281	536	MobiDBLite	consensus disorder prediction	1	52	-	-
	Ahy13g2281	536	Gene3D	Phosphorylase Kinase; domain 1	114	208	-	-
	Ahy13g2281	536	ProSitePatterns	Protein kinases ATP-binding region signature.	129	152	IPR017441	GO:0005524
	Ahy13g2281	536	ProSiteProfiles	AGC-kinase C-terminal domain profile.	431	506	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Ahy13g2281	536	SMART	pkinase_C_6	431	498	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Ahy13g2281	536	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	41	535	-	-
	Ahy13g2281	536	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	242	254	IPR008271	GO:0004672\|GO:0006468
	Ahy13g2281	536	MobiDBLite	consensus disorder prediction	516	536	-	-
	Ahy13g2281	536	MobiDBLite	consensus disorder prediction	22	45	-	-
	Ahy13g2281	536	SMART	serkin_6	123	430	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy13g2281	536	MobiDBLite	consensus disorder prediction	1	21	-	-
	Ahy13g2281	536	ProSiteProfiles	Protein kinase domain profile.	123	430	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy13g2281	536	SUPERFAMILY	Protein kinase-like (PK-like)	120	476	IPR011009	-
	Ahy13g2281	536	CDD	STKc_NDR_like	121	497	-	-
	Ahy13g2281	536	Pfam	Protein kinase domain	125	274	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy13g2281	536	Pfam	Protein kinase domain	321	430	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy13g2281	536	Gene3D	Transferase(Phosphotransferase) domain 1	209	447	-	-
	Ahy13g2281	536	PANTHER	SERINE/THREONINE-PROTEIN KINASE	41	535	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy13g2281	Ahy-Chr13	47010938	47022319	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy13g2281	34	535	AGC Kinase Gene Family	AT2G19400	73.016	0.0	758

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Ahy13g2281		Pkinase	7.80E-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy13g2281	K08790		-	gmx:100802177	826.624

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy13g2281	13	47010938	47022319	Ahy13g2281	13	47010938	47022319	ECH
	Ahy13g2281	13	47010938	47022319	Ahy3g2003	3	44158737	44173204	hybridization