Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2253 ATGAGTTGGCGGAGGGTGTTGAAGTCTGCGCAGGCACTTGCTGCACACACCTTTCTGTTGTGCTTCACTGTTTTGCTTGTTCTCAAGCTCGATCACCGTCTCTATTCATCTTGGTGGATAATATTTTTCCCTCTTTGGATGTTTCATGCTGTTGTGGCTCGAGGAAGGTTTTCACTACCAGCACCATCAGCCCCGCGTAATCGAAATTGGGCACCGTGCCATGCCGTCGTTGCAATGCCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTATACGTTCGTCACTTTCCAGCAGTCAATCTGAAGATCGTGTTCCTTCCCTTACTAATATTTGAAATCATCATTCTCATTGACAATTTCAGAATGTGTAGGGCTCTAATGCCAGGAGATGAAGAGAACATGAGTGATGAGGCGATATGGGAAACTCTTCCTCACTTTTGGGTTGCAATCTCTATGGTCTTCTTCATTGCTGCTACAGTGTTCACACTCCTAAAACTTAGTGGTGATGTAGGTGCTCTGGGCTGGTGGGACTTATTTATTAACTTTGCCATTGCCGAGTGTTTTGCTTTTCTTGTATGTACAAAGTGGTCTAATCCGGTGATTCATAGAAATCCAAGAGAAGCCAGTTCTTCTTCTACTACTGTTAGATATCTTGACTGGAACGGCGGTTTAGTTGTTTCTTCCGAGGAAAATCAACATCCAGAGAGAATGTGTAGCCTGCAAGACATAGGAGGCCATTTTATGAAAGTACCGATTATTATATTCCAGATTCTTCTTTGTATGTACTTGGAGGGAACACCTGCTTGTGCCAGAAAGATACCTCTACTGATACTTTTCTCTCCCCTTTTCACGCTGCAAGGTGCTGGTGTACTGTTAGCTGGATCTAAGTTAGTGGAGAAACTTGTTTTGCTGCTAAACAGTGGAGCTGGTGGGGGAATTTATATTAGAATTTCTTCAACAGCTCATGATTGCTTGGGGTTCTTGCACCATGGTTCTAGGTTACTAGGTTGGTGGTCAATTGATGAAGGTAGTCGGGAAGAACAGGCACGCTTATACCAAGAGGGAGCATCTGGGTATAATACGTTCTGCGGTTATCCACCTGAGATTGTTAAGAAAATGCCTAAAAAAGATCTTGCTGAGGAGGTTTGGAGACTCCAGGCAGCTCTTGGTGAACAGACAGAAATTACAAAATACAGCCAGCAAGAGTATGAAAGACTTCAAAATGAAAAAGTGTTGTGTAGAGTTTGTTTCGAGGGAGAGATAAGCGTTGTACTTCTCCCATGCCGGCATCACATCCTTTGCAGCAATTGCTCCGAGAAATGCAAGAATTGCCCGATTTGCCGCGTCACGATTGCAGAGCGGCTACCTGTGTATGATGTTTAG 1398 0.4371 MSWRRVLKSAQALAAHTFLLCFTVLLVLKLDHRLYSSWWIIFFPLWMFHAVVARGRFSLPAPSAPRNRNWAPCHAVVAMPLLIAFELLLCIYLESLYVRHFPAVNLKIVFLPLLIFEIIILIDNFRMCRALMPGDEENMSDEAIWETLPHFWVAISMVFFIAATVFTLLKLSGDVGALGWWDLFINFAIAECFAFLVCTKWSNPVIHRNPREASSSSTTVRYLDWNGGLVVSSEENQHPERMCSLQDIGGHFMKVPIIIFQILLCMYLEGTPACARKIPLLILFSPLFTLQGAGVLLAGSKLVEKLVLLLNSGAGGGIYIRISSTAHDCLGFLHHGSRLLGWWSIDEGSREEQARLYQEGASGYNTFCGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHHILCSNCSEKCKNCPICRVTIAERLPVYDV* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2253 465 Pfam Zinc finger, C3HC4 type (RING finger) 415 457 - -
Ahy13g2253 465 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 465 - -
Ahy13g2253 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 463 IPR013083 -
Ahy13g2253 465 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 465 - -
Ahy13g2253 465 Pfam Transmembrane Fragile-X-F protein 28 289 IPR019396 -
Ahy13g2253 465 SUPERFAMILY RING/U-box 409 460 - -
Ahy13g2253 465 ProSiteProfiles Zinc finger RING-type profile. 418 453 IPR001841 -
Ahy13g2253 465 SMART ring_2 418 452 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2253 Ahy-Chr13 45864866 45871526 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2253 1 465 C3H Transcription Factor Family AT1G73950 71.613 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2253 - - gmx:100791390 838.95