Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2252 ATGACGTGGCGGAGGCTGTTAGAGCCTGTGGCTGCACACGCCTCCCTTCTCTGCTTCACTGCTTTGCTTCTTCTAAAGCTTCACCACCGCCTCTCCTTATCGTGGTGGATAATATTCTTTCCTCTTTGGATCTTTCATGCCATTGTGGCTCGAGGGAGGTTTTCATTGCCAGGGTTGTCAGCCCGACATAATCAAAATTGGGCAACAGGTCATGCTGTCGTTGCAATGCGATTACTTACTGCATTTGAACTGCTCCTTTGTATATATCTTGAGAGCATATGTGTTCGTGGTGCTCAAGTAGTCAATATGAAGATTGTGTTCCTTCCATTACTAATATTTGAAATCATTATTCTCATGGAAAATTTCAGATTATGTAGGGCTCTAATGCCAGGGGATGAAGAAAACATGAGTGCTGAGGTAATATGGGAAACACCTCCTCACTTTTCGGTTGCAATCTCTAGGGTCTTCTTCATTACTGCTACAATTTTCACACTCTTAAAACTGAGTGGTGATTTACTCGTTCTCAGCTGGTGGGATTTATTTGTTAACCTTGCCATCGTCGAGTGCTTTGCTTTTCTTGTATGTACAAAGTGGTCCAATCTGGTCACCAGTGGTTTAGTGGTTTCTTCAGAGCGAAATCGACGCCCGAAGAGAATGTGTAACATGCAAGACATAATCATGGAAGTACCAGTAATAGTATTCCAGATTCTAATTTGTAGGTATTTAGAGGGGGCACCTGCTTGTGCTAAAAAGAAACCTGCACCGAGTTTCTTTTCTTTTCTTCTCCAGCTGCAAAGTGCTGGTGTAATGTTTGCAGCATCTGCCTTAGTGGAGAAACTTATACTGCTATTAAATAGTGGAGCTGCTCCAAGAATATATTCTAGAGGTGTTTCAAGAGTTCATGATTGTTACTTGGGCCTCTTGTACCATGGTTCTAGATTTTTAGGTTGGTTTTCAATTGCTGAAAGGAGCCAGGAAGAACAGGAAAAATTGGACTGTGAAGGATCTTCTGGTTATAATACGTTCTCTGGCAACTCACCTGTACCTGAGATCATTAAGAAAATGCCTAAAAAGGATCTTGCTGAAGAGGTTTGGAGACTGCAGACAGCTCTTGGTGAGCAGGCAGAAATTACAAAATGCCGCGAGCGGGAGTATGAAAGGCTTAAAAATGAGAAAATATTATGCAGAATTTGTTTTCAGAGAGAGATTAGCATTGTACTACTTCCATGCAGGCATCGCAGTCTTTGCAGCACATGCGCGGCGAAATGCAAGAACTGCCCAATCTGCCGCGACAATATTATAATGCGGTTACCCGTGTATGATGCTTAG 1329 0.4259 MTWRRLLEPVAAHASLLCFTALLLLKLHHRLSLSWWIIFFPLWIFHAIVARGRFSLPGLSARHNQNWATGHAVVAMRLLTAFELLLCIYLESICVRGAQVVNMKIVFLPLLIFEIIILMENFRLCRALMPGDEENMSAEVIWETPPHFSVAISRVFFITATIFTLLKLSGDLLVLSWWDLFVNLAIVECFAFLVCTKWSNLVTSGLVVSSERNRRPKRMCNMQDIIMEVPVIVFQILICRYLEGAPACAKKKPAPSFFSFLLQLQSAGVMFAASALVEKLILLLNSGAAPRIYSRGVSRVHDCYLGLLYHGSRFLGWFSIAERSQEEQEKLDCEGSSGYNTFSGNSPVPEIIKKMPKKDLAEEVWRLQTALGEQAEITKCREREYERLKNEKILCRICFQREISIVLLPCRHRSLCSTCAAKCKNCPICRDNIIMRLPVYDA* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2252 442 Pfam Transmembrane Fragile-X-F protein 25 259 IPR019396 -
Ahy13g2252 442 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 441 - -
Ahy13g2252 442 SUPERFAMILY RING/U-box 387 436 - -
Ahy13g2252 442 Pfam Zinc finger, C3HC4 type (RING finger) 393 433 - -
Ahy13g2252 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 440 IPR013083 -
Ahy13g2252 442 ProSiteProfiles Zinc finger RING-type profile. 395 430 IPR001841 -
Ahy13g2252 442 SMART ring_2 395 429 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2252 Ahy-Chr13 45837588 45844329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2252 3 441 C3H Transcription Factor Family AT1G73950 58.559 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2252 - - ahf:112738273 855.129