Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2247 ATGTATTCATCACCAAATAGTAGTAACACTATTCATCACTTCATCAATGGCAACGATGACCAAGTCTCCCCCTACCCTAATAACCAACCATTATTATTTCCCTCTTCTTCGTCTTCTTCTAATGTTAGGCCTTTTTCAATTGAAAGCAGCCCTTCTTCAAAAGAAGAACAAGCCAATAATAATAATAATAATTGTGCTCTTCCTCTTTCTCCTCCTCCCACTCCTTCTTTTTCTTTCTTTCAATTCCCTTACTCTCCATTGTTTGAAGACAATGAGATTTTCCTTAACGGAGAATTTCACTTTCTTCACCACCAGTCTCTGGCACCGTCTGATCGCAACGATCAGGCAGGAGTAGTAAACATGGAGGTTTCAATCACCAACACTAACAAGAACTCATCAGGGCAAGGCATGACCATCACCACCGCTGCCGCCGCCGCCGCCGCCGCTACCACCGCCCCTGTGGCTACAACCACCACCACAAGAAGAAGATCAAGCAAGAGGGACCGGCACAGCAAGATCAACACTGCTAGGGGACTAAGGGACAGAAGAATGAGATTGTCCCTTGAAGTTGCTAGAAGATTCTTCGGTCTTCAAGATATGCTTGGATTCGACAAAGCAAGCAAGACCGTTGAGTGGCTGCTCAACCAAGCGAAAGTGGAGATCAAACAACTCGCAAGGGAGAAGAAGAAGAATCACCAAAGCTGTAGCAGCTTCAATGGCAAAAGCGCCTCTTCAACTTCTGAGTGCGAAGGGGTTTCGAGCTTGGACGAAGTGGCCATAAGCGAAAATCAAGGACACAACGAAAAACTATTACCCACACCAACAACTACCACGAAGACGAAGAAGCGAAGGGGTAGTAACAAAGTTTCAAGGAAAAGCTCATTCAATCCAATTGGTAAAGAATCGAGGGAAAAGGCAAGGGAAAGGGCCCGGGAAAGAACAAGAGAGAAGACCAGGTTGAAGAAGCTTGCTCATCAAGAATCAACGGATAAAAATAACAATAATAATGATAATGATAATAATAATAAGCAATGCAACAACAACAATCATGATGTGGCAACAAGTGTTATTGGATTGAATCCATTGAGTTCATGGAACCCCTTTGAGAATGTTGAAGAATCTGCAGGTACTAATAATAACGATAGTAATCACCATAGTCATCAAGGCTTGAATGCCCAAGCAGAAGCAGAAGAACCAAGTTCTCCGGCAAAGGATCACCGGCCTTTGGAAGCTGCTGCGGAGGACATGGTGCATCACGAAGAAGAATCTCTTGTGATTATGAGCAAATGGAGTCCAACAATGATCTTCAATTCTCTCCTCAATAACTCATCAATCCTTCAAGAACATCATCAATTTGCAGAATTTCAGTCCATGGGAAAATCCTGGGAGACCTACAACAATTACGTGTAA 1410 0.434 MYSSPNSSNTIHHFINGNDDQVSPYPNNQPLLFPSSSSSSNVRPFSIESSPSSKEEQANNNNNNCALPLSPPPTPSFSFFQFPYSPLFEDNEIFLNGEFHFLHHQSLAPSDRNDQAGVVNMEVSITNTNKNSSGQGMTITTAAAAAAAATTAPVATTTTTRRRSSKRDRHSKINTARGLRDRRMRLSLEVARRFFGLQDMLGFDKASKTVEWLLNQAKVEIKQLAREKKKNHQSCSSFNGKSASSTSECEGVSSLDEVAISENQGHNEKLLPTPTTTTKTKKRRGSNKVSRKSSFNPIGKESREKARERARERTREKTRLKKLAHQESTDKNNNNNDNDNNNKQCNNNNHDVATSVIGLNPLSSWNPFENVEESAGTNNNDSNHHSHQGLNAQAEAEEPSSPAKDHRPLEAAAEDMVHHEEESLVIMSKWSPTMIFNSLLNNSSILQEHHQFAEFQSMGKSWETYNNYV* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2247 469 MobiDBLite consensus disorder prediction 1 67 - -
Ahy13g2247 469 ProSiteProfiles TCP domain profile. 166 224 IPR017887 -
Ahy13g2247 469 ProSiteProfiles R domain profile. 300 317 IPR017888 -
Ahy13g2247 469 Coils Coil 214 234 - -
Ahy13g2247 469 MobiDBLite consensus disorder prediction 365 405 - -
Ahy13g2247 469 MobiDBLite consensus disorder prediction 152 173 - -
Ahy13g2247 469 MobiDBLite consensus disorder prediction 365 395 - -
Ahy13g2247 469 MobiDBLite consensus disorder prediction 297 328 - -
Ahy13g2247 469 Coils Coil 303 323 - -
Ahy13g2247 469 Pfam TCP family transcription factor 165 319 IPR017887 -
Ahy13g2247 469 MobiDBLite consensus disorder prediction 1 69 - -
Ahy13g2247 469 PANTHER TRANSCRIPTION FACTOR TCP18 94 406 - -
Ahy13g2247 469 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 94 406 IPR005333 GO:0003700
Ahy13g2247 469 MobiDBLite consensus disorder prediction 235 249 - -
Ahy13g2247 469 MobiDBLite consensus disorder prediction 226 249 - -
Ahy13g2247 469 MobiDBLite consensus disorder prediction 262 280 - -
Ahy13g2247 469 MobiDBLite consensus disorder prediction 329 351 - -
Ahy13g2247 469 MobiDBLite consensus disorder prediction 262 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2247 Ahy-Chr13 45539318 45541916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2247 162 334 TCP Transcription Factor Family AT3G18550 41.117 4.81e-30 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ahy13g2247 TCP 1.20E-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2247 - - adu:107471910 690.263