Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2201 ATGGTGCAATCAAGGAAGTTCAGAGGTGTCAGGCAGCGTCATTGGGGTTCTTGGGTTTCCGAGATTCGTCACCCACTCTTGAAGAGGAGGGTGTGGTTAGGGACATTTGAAACTGCGGAAGAAGCGGCAAGAGCCTACGATCAAGCTGCAATTTTGATGAGTGGCCGGAATGCCAAGACCAATTTCCCCATCATACACACACCGGACGGTGATCCAAAGGTTGTCAGCTCCACCGAGAAAGCGGCGGCTCATTCTTCCTCCGCCTCAGCCGCCTCCAATAAGGATCTAGAGGAGATTCTACACGCCAAGCTTCGAAAATGCGGGAAAGTTCCTTCACCTTCCATGACATGCTTGAGGCTCGACACGGAGAATTCACACATTGGTGTGTGGCAGAAGCGCGCTGGCCAGCGTTCTGATTCCAATTGGGTCATGAGGGTTCAGCTCGGTGCTGGAAACAACAAAACTAGTGGTGCTGCCATCAGTTCTATGGTTGCTTCTTCTTCTTCTTCCTCGTCTTCTTCTTGTGATCTTCTTCAGTCTCCGTCGTCAACCGTATCCGGTGGTGATCTGGTTAGGGGAGAGATGGATGAGGAGGAGAGAATCGCATTGCAGATGATTGAAGAGCTTCTCAACAGAAATTGTCCAAGTCCATCGTCCTTCAACAACAACAACTTGGATGAAACGGGTGTTCACCATGACCATAATAATAATGCTACCTTCTTTCTTGGATAA 732 0.4945 MVQSRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPIIHTPDGDPKVVSSTEKAAAHSSSASAASNKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGQRSDSNWVMRVQLGAGNNKTSGAAISSMVASSSSSSSSSCDLLQSPSSTVSGGDLVRGEMDEEERIALQMIEELLNRNCPSPSSFNNNNLDETGVHHDHNNNATFFLG* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2201 243 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Ahy13g2201 243 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Ahy13g2201 243 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Ahy13g2201 243 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 220 - -
Ahy13g2201 243 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Ahy13g2201 243 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 220 - -
Ahy13g2201 243 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Ahy13g2201 243 MobiDBLite consensus disorder prediction 168 187 - -
Ahy13g2201 243 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Ahy13g2201 243 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Ahy13g2201 243 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Ahy13g2201 243 MobiDBLite consensus disorder prediction 168 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2201 Ahy-Chr13 43668537 43670390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2201 1 213 AP2-EREBP Transcription Factor Family AT1G15360 58.685 7.87e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy13g2201 AP2 1.40E-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2201 - - adu:107472039 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2201 13 43668537 43670390 Ahy18g2683 18 129951654 129953069 ECH
Ahy13g2201 13 43668537 43670390 Ahy13g2201 13 43668537 43670390 ECH
Ahy13g2201 13 43668537 43670390 Ahy3g2059 3 48997085 49000281 hybridization
Ahy1g1770 1 93931137 93934083 Ahy13g2201 13 43668537 43670390 PCT
Ahy13g2201 13 43668537 43670390 Ahy1g1770 1 93931137 93934083 PCT