Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2196 ATGGCTGCAGCAGAGGCAGCTCAAGCTGCCGCTGGTCCACGGTATGCACCCGATGATCCCACCCTCCCTACGCCATGGAAGGGGCTAATTGATGGAAGCACTGGTCTTTTGTACTACTGGAACCCTGAAACTAATGTCACCCAGTATGAGAAACCTCCCCCTTTGCCTTCGGGCCCTGCTCCGGCTGCTTCTACACCCAACATGGCGCCCATACCTGTGGCTCATGCGATGCAATCTGGTGGGATGATGGGGCAGCATGGGCAGCAAATGCTTCAGTCCTCTCAACAGCAAGGGAGTAACCTTGCTCAGCAACATGGGCCAATGATGCCACAACAGCAGAGTTCGCATGTGGCATCTCAGCAGAAGCCATCTCCGGTTGCACAAGGGGTGCAACAGCAGAATTTGCAGTTGGCACAGTCCATGCCACAACCAGGGTTTAATCAGGCTGGACAGCATTCAATGCCGCATCAGGGACAGCATTCAATGCAGCCTCAGGGACAGTATCCCATGCAACCCCAAGGGCAACAAATGGTCCAGCCTAAAGGGCAGCAGATGACACAACAACCACATCAGATGCATTATCAGATGCAGCCCCAAGGTATCAATGCCCAACAATTTGGTCAAGGAGCATCTCAGGCTCAGGGCTCACATTCTGTGCAACCACAAGCACATCAATTCGCCCCCCAGAACATGCATTATATGCCATATCAGCCAAACATGCCTCAACCTGTGCAGCAAAGTTCCCAGCATAACATGCATGGTCATTCTTATGAAAACCAACAAGACTTCAAATCAGCATTCCCAAAGATAGAGGAACCAGAGTTTAAAAATGAAAACCAGGTTGGAGTTTCGCCATCTAACTATCAACAAACCAATCAGAACATTCCTGCTGGAGTTAGATCCGGACCATCTGGGCAAGTGCCAGATGGAGGTGCAAATGCTGGTCACTCAAAACAGTTTGGTGGCGCACCAGGAAGCATACAACAGTCTCCTTCTGCAGTGCCATTACAACAGGGTAGTTCTTATCCAGTTTACCAACATGGTCCTAGCTTTCAAAACCAGATGGGGCCTGGTATGATGCATGGTCATCCACCCAATGTCCATCCTGGAAGCCAAAAGATGGGACATGCAGATAGTTTTCATGGTAGAGCTGGGAATGAATATTACTATAACTCTAGCAAAGAGATGCCAGCTATGGGTCCTCAGCAGCCAAATATTGCACCAATACCCATTTCAACAAAGCAGCAGGATATGAGAATGAGCAGCGGCCCTTTTCAAAATGTAATGCCTAGTGGAAATGGAAGTGGTATCCCAGGTCATCCAATGCACATGTTTCCACCAGTAGGAGGGCATCCACCTCTCTCAAGTAACCCCTTGAAAGGACCTCCGTATATGGGATCTTCAGATGTTACTGATATGACACCTGCTGAAATTTATTGTCAGCAACATGAAGTTACAGCAACGGGTGACAACATTCCACCTCCTTTTATGACATTTGATGCTACTGGATTTCCTCCAGAGATTTTGAGAGAGATATATTCTGCTGGCTTCTCAAACCCAACACCAATTCAGGCTCAAACTTGGCCAGTAGCACTGCAAGGTAGGGACATAGTGGCAATTGCAAAAACAGGCTCTGGCAAAACATTGGGCTACTTAATGCCTGCATTCATCCTTCTTAGGCAGAGAAGGAATAATCCTTTGAATGGCCCCACTGTCTTGGTTTTAGCTCCAACACGTGAACTTGCTACACAGATCCAAGATGAGGCCGTCAAATTTGGAAGATCTTCACGTTTCTCTTGCACGTGTTTGTATGGTGGAGCACCCAAAGCCCAACAGCTAAAAGAGTTAGATCGGGGAGCAGACATTGTTGTTGCCACACCTGGCCGACTCAATGACATCCTTGAAATGAAGAAAATTGACTTTGGGCAAGTTTCACTGCTTGTGCTTGATGAGGCTGACCGTATGCTTGACATGGGTTTTGAACCTCAAATCCGGAAAATTGTTAATGAGATTCCACCACGTAGGCAAACTCTCATGTATACGGCAACATGGCCAAAAGAAGTAAGAAAAATTGCCAGTGACCTGCTCGTTAATCCTGTTCAGGTTAACATTGGAAGTGTTGATGAGCTTGCCGCAAATAAAGCTATCACACAGTATGTTGAATTTGTCCCTCAAATGGAGAAGCAGAGGCGATTAGAGCAGATCCTCAGATCCCAAGAACGGGGCTCTAAGGTTATTATTTTTTGTTCCACAAAGAGGTTATGTGATCAACTTGCCCGTAGTATTGGTCGCAATTATGGGGCTGCTGCAATTCATGGTGACAAGTCTCAAAGTGAGAGGGATTGGGTTTTAAATCAGTTCCGGAGTGGGAAGTCACCAGTTTTAGTTGCCACTGATGTTGCTGCTCGTGGGCTTGACATCAAGGATATAAGGGTGGTTATAAACTATGATTTCCCTACTGGAGTTGAGGATTATGTACACCGAATTGGAAGAACTGGACGGGCAGGTGCTACTGGAGTATCGTACACCTTTTTCTCGGAGCAGGACTGGAAACATGCATCTGATTTAATCAAAGTCTTGGAGGGTGCAAACCAGCATGTGCCTCCAGAGCTAAGACAGATGACCTTGCGCGGACCACCAAACTTTGGAAAAGAGCGGGGTGGGATGAGTCGTTTCGACTCTGGTGGTGGTGGGCGTTGGGACAACGGTGGTCGTGGTGGCATGAGGGATGGGGGCTTTGGTGGTCGTGGTGGCATGAGAGATGGTGGCTTTAGTGGTCGAGGCGGCATGAGGGATGGTAGCTTTGGTGGCCGAGGTGGCATGAGGGAGAGTGGATTCAGCAATGATGGTGGCATGAGAGATGGTGGCTTTGGTGCTCATGGTGCTAGCGGTCAAGGTGGGAGAGTTGATATGTTTGGTGGTAGGGGAAATAGAGGTCGAGGATTTGGTGGCCCTCGTGGTGGTCATGCTGGGTGGGGTAGAGGGGATCGTGGTCCAAATGACCGATTCAACATGGATGGAAGAGGAAGAGGGCGAGGACGTGGGCGATTAGACAACAGAAGAGATGTTGGATACAGGAATAGAGGCAGAAGCCGTAGCCGTAGCCCAGAGAGAGTACGAACATGGGACTATAGTAGCAGAAGTCGTAGTAGGAGTTGCAGCAGTAGGAGCTGGAGCCGGAGCCGGAGCCGAAGCAGAAGCCGCAGTTGGTCGCGTGGTCGCAGTCGGAGTCGCAGCTATAGCCCTAGCCCTCGTCGGAGTCGAAGCCGCAGTCGTAGCGGTCGCAGTTACAGCCGCAGCCGAAGTCCCCGTAGAAGTCCCAGCTATGATAGGCGTGATAGGACAGATCAACACCATTCTGATCAAAAGGATTATAGAGAACCAGAGGTCCAAGCTCCCAATCCGGGAGTGTCTCCAAGCTCCCAAGGGCAGCAGAATTCGATTTTGGGAACTGATCAAGTGGATCAGGCGCCACTGGTTGCTGGGAGTGGTGTCCCAGAAGATCCCAATGCTCTGGCATAG 3522 0.4952 MAAAEAAQAAAGPRYAPDDPTLPTPWKGLIDGSTGLLYYWNPETNVTQYEKPPPLPSGPAPAASTPNMAPIPVAHAMQSGGMMGQHGQQMLQSSQQQGSNLAQQHGPMMPQQQSSHVASQQKPSPVAQGVQQQNLQLAQSMPQPGFNQAGQHSMPHQGQHSMQPQGQYPMQPQGQQMVQPKGQQMTQQPHQMHYQMQPQGINAQQFGQGASQAQGSHSVQPQAHQFAPQNMHYMPYQPNMPQPVQQSSQHNMHGHSYENQQDFKSAFPKIEEPEFKNENQVGVSPSNYQQTNQNIPAGVRSGPSGQVPDGGANAGHSKQFGGAPGSIQQSPSAVPLQQGSSYPVYQHGPSFQNQMGPGMMHGHPPNVHPGSQKMGHADSFHGRAGNEYYYNSSKEMPAMGPQQPNIAPIPISTKQQDMRMSSGPFQNVMPSGNGSGIPGHPMHMFPPVGGHPPLSSNPLKGPPYMGSSDVTDMTPAEIYCQQHEVTATGDNIPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNPLNGPTVLVLAPTRELATQIQDEAVKFGRSSRFSCTCLYGGAPKAQQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDELAANKAITQYVEFVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARSIGRNYGAAAIHGDKSQSERDWVLNQFRSGKSPVLVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVSYTFFSEQDWKHASDLIKVLEGANQHVPPELRQMTLRGPPNFGKERGGMSRFDSGGGGRWDNGGRGGMRDGGFGGRGGMRDGGFSGRGGMRDGSFGGRGGMRESGFSNDGGMRDGGFGAHGASGQGGRVDMFGGRGNRGRGFGGPRGGHAGWGRGDRGPNDRFNMDGRGRGRGRGRLDNRRDVGYRNRGRSRSRSPERVRTWDYSSRSRSRSCSSRSWSRSRSRSRSRSWSRGRSRSRSYSPSPRRSRSRSRSGRSYSRSRSPRRSPSYDRRDRTDQHHSDQKDYREPEVQAPNPGVSPSSQGQQNSILGTDQVDQAPLVAGSGVPEDPNALA* 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2196 1173 MobiDBLite consensus disorder prediction 1046 1060 - -
Ahy13g2196 1173 Gene3D - 707 877 IPR027417 -
Ahy13g2196 1173 MobiDBLite consensus disorder prediction 936 1173 - -
Ahy13g2196 1173 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Ahy13g2196 1173 Pfam DEAD/DEAH box helicase 521 691 IPR011545 GO:0003676|GO:0005524
Ahy13g2196 1173 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 648 656 IPR000629 -
Ahy13g2196 1173 MobiDBLite consensus disorder prediction 1134 1153 - -
Ahy13g2196 1173 Pfam WW domain 22 52 IPR001202 GO:0005515
Ahy13g2196 1173 SMART ww_5 21 54 IPR001202 GO:0005515
Ahy13g2196 1173 Gene3D - 472 706 IPR027417 -
Ahy13g2196 1173 MobiDBLite consensus disorder prediction 1 26 - -
Ahy13g2196 1173 MobiDBLite consensus disorder prediction 995 1045 - -
Ahy13g2196 1173 SMART helicmild6 752 836 IPR001650 -
Ahy13g2196 1173 MobiDBLite consensus disorder prediction 78 193 - -
Ahy13g2196 1173 CDD SF2_C_DEAD 716 845 - -
Ahy13g2196 1173 MobiDBLite consensus disorder prediction 1061 1099 - -
Ahy13g2196 1173 MobiDBLite consensus disorder prediction 82 193 - -
Ahy13g2196 1173 Pfam Helicase conserved C-terminal domain 728 836 IPR001650 -
Ahy13g2196 1173 MobiDBLite consensus disorder prediction 49 68 - -
Ahy13g2196 1173 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 731 875 IPR001650 -
Ahy13g2196 1173 MobiDBLite consensus disorder prediction 294 382 - -
Ahy13g2196 1173 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 497 525 IPR014014 GO:0003724
Ahy13g2196 1173 MobiDBLite consensus disorder prediction 322 353 - -
Ahy13g2196 1173 MobiDBLite consensus disorder prediction 52 66 - -
Ahy13g2196 1173 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 290 967 - -
Ahy13g2196 1173 SMART ultradead3 516 719 IPR014001 -
Ahy13g2196 1173 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Ahy13g2196 1173 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 528 702 IPR014001 -
Ahy13g2196 1173 MobiDBLite consensus disorder prediction 872 914 - -
Ahy13g2196 1173 SUPERFAMILY WW domain 14 52 IPR036020 GO:0005515
Ahy13g2196 1173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 568 852 IPR027417 -
Ahy13g2196 1173 MobiDBLite consensus disorder prediction 1104 1128 - -
Ahy13g2196 1173 CDD WW 23 51 IPR001202 GO:0005515
Ahy13g2196 1173 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 290 967 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2196 Ahy-Chr13 43355067 43361455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2196 485 874 Eukaryotic Initiation Factors Gene Family AT3G19760 34.351 2.64e-67 231