Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2179 ATGATGATACCAAGTCATCATCCTATTCCTTTTGATCTCAATGAAGAACATCACCTCTTCACTACTACTACATATCCTCAACTTTCTTCTCCTTCTTCTTCTTTATCATCTTATTCTTATTTGGACCAACATCCAAACCATTTACAAATAACTCATCAACAGGCTGAGAAGATTCATGTTCCTTCTAGTGGAGGATCATGGGATCATATTCATGACCACAGAAAAGAAGAAGAAGAAGAAGAGAAGGATGGAAACAAAAAGAGTAGTAAACTGCTCAAGTTGAAAATTTTGAAGAAAGAAGAAAGGAATGAAAATCAAGCTCATGATGATGAGGAGGACCATGGTTCGGTGAAGTGGATGTCTTCAAAGATGAGGATCATGGGTGGTTCTGATACTAATAATTTCAGGTTAAGGTTTGATGAAGAGGGACCAAAGCAGCAACCGTCGCTATCCCCTTTAGGAACTGATAATAGCAGCAGCAACAGTAACAACAACAACTCTTCTTCAAACCGTCATGAAAATAATAATAATATGATTGTTAGGGTTTGTTCTGATTGCCACACCACAAAGACCCCTCTTTGGAGAAGTGGACCAAGAGGCCCCAAGTCTCTTTGCAATGCTTGTGGAATTAGACAAAGGAAGGCGAGGAGAGCTGCCGCGGCGGCGGCGGCGGCGGAGGTTGCAGCATCAGAGAACGATACAACTCTCATGGCTTCTACTGATGATGATGATGGATCTCTTCATGGTATGAAGAAGAAGGAAAAGAAGTTACACAAGCACAACAACAAAGATAAGAAGTTGAAAGCCAAGTGTAGTGCACCAAATCAGTTGAAAAAGAAGCACAAAATTGGAACCAATAACAATAAATTATCTCATAGAGGAAGAAAGAAGGTTGGTTTTGAAGACCTGACAATAAGTTTGAGCAAGAACTTGGCTTTAAATGTGTTCCCTCATGATGAGAAAGAGGCTGCAATCTTGCTCATGGCCTTATCCTATGGTTTACTTCATGGATTTCCCTCAGATCGTTACTTAGATTAA 1038 0.4008 MMIPSHHPIPFDLNEEHHLFTTTTYPQLSSPSSSLSSYSYLDQHPNHLQITHQQAEKIHVPSSGGSWDHIHDHRKEEEEEEKDGNKKSSKLLKLKILKKEERNENQAHDDEEDHGSVKWMSSKMRIMGGSDTNNFRLRFDEEGPKQQPSLSPLGTDNSSSNSNNNNSSSNRHENNNNMIVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAAAAAAAEVAASENDTTLMASTDDDDGSLHGMKKKEKKLHKHNNKDKKLKAKCSAPNQLKKKHKIGTNNNKLSHRGRKKVGFEDLTISLSKNLALNVFPHDEKEAAILLMALSYGLLHGFPSDRYLD* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2179 345 Coils Coil 250 270 - -
Ahy13g2179 345 MobiDBLite consensus disorder prediction 57 118 - -
Ahy13g2179 345 MobiDBLite consensus disorder prediction 148 176 - -
Ahy13g2179 345 ProSitePatterns GATA-type zinc finger domain. 183 208 IPR000679 GO:0006355|GO:0043565
Ahy13g2179 345 Pfam GATA zinc finger 183 216 IPR000679 GO:0006355|GO:0043565
Ahy13g2179 345 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 4 337 - -
Ahy13g2179 345 MobiDBLite consensus disorder prediction 66 118 - -
Ahy13g2179 345 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 4 337 - -
Ahy13g2179 345 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 180 217 - -
Ahy13g2179 345 CDD ZnF_GATA 182 210 IPR000679 GO:0006355|GO:0043565
Ahy13g2179 345 Coils Coil 91 111 - -
Ahy13g2179 345 SMART GATA_3 177 228 IPR000679 GO:0006355|GO:0043565
Ahy13g2179 345 ProSiteProfiles GATA-type zinc finger domain profile. 181 213 IPR000679 GO:0006355|GO:0043565
Ahy13g2179 345 Gene3D - 179 222 IPR013088 GO:0006355|GO:0008270
Ahy13g2179 345 MobiDBLite consensus disorder prediction 142 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2179 Ahy-Chr13 41897769 41900288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2179 92 337 C2C2-Gata Transcription Factor Family AT4G26150 38.610 6.93e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ahy13g2179 GATA 3.80E-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2179 - - adu:107478822 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2179 13 41897769 41900288 Ahy3g1869 3 39899999 39903181 hybridization
Ahy11g3106 11 148682940 148684662 Ahy13g2179 13 41897769 41900288 PCT
Ahy1g1863 1 95212695 95214082 Ahy13g2179 13 41897769 41900288 PCT
Ahy13g2179 13 41897769 41900288 Ahy11g3106 11 148682940 148684662 PCT
Ahy13g2179 13 41897769 41900288 Ahy1g1863 1 95212695 95214082 PCT