Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2162 ATGGCAGTGGATCTGGTAGGAGTTCCACGGATGAGGATGGAACAACAAGAACAAGTTGCAATTCAAGAAGCTGCTTCGGCTGGCTTGAAGAGCATGGAGCATCTCATTCGCCTCCTCTCTTCTCAATCTCAATCTCATTCTCCTTCTACTTCCTCTTCCCCTCTCCCGAACAATAATAACAACCTCAACTGCTCCCAACTAACCGACTTCACAGTTTCCAAGTTCAAGCAAGTCATCAACCTCCTTAACCGCACTGGCCACGCCCGCTTCCGCCGCGCACCACCACAACAACAGCCCAACCCTACCCCTCAGGCCCAGCCTGGAACCACCACCGCCTTCACGCTAGATTTCCACAAACCCACCATTCTGAACTCCAAGCCCGCCGTCAACAAGGATGTCGACCAAGAAATGGAACTTAGTATTTCCCCTCCTGTTTCCACAACCACCTCCTCCACCTTCATGTCCTCCATCACCGGCGATGCTAGCGTCTCCGACGGCAAGATTGGCCCCTTCCTTACCCTTCCAGCTCCGCCTCCCGCTCCCGTTGCCTCCGGAAAACCTCCTCTCTCTTCTTCTCACCGGAAAAGGTGCCATGACGCAACCCTCTCCGGAAAAGCCTCCTCCTCCGCTCACTGCCATTGCTCCAAGAGAAGGAAATCACGTGTGAAACGAACGATCCGTGTGCCGGCTATAAGTTCGAAGATCGCCGATATACCGCCTGACGAATTCTCGTGGAGAAAGTACGGTCAGAAACCGATCAAGGGCTCACCTTACCCTCGTGGTTACTATAAGTGCAGCACCGTGAGAGGATGTCCGGCCAGGAAGCATGTGGAGAGAGCACAAGACGATCCGAAGATGCTAATAGTGACGTACGAAGGGGAACACCGTCACAATCCCCAGCCACACTCGCCGGAAACTGCCGGCACTCCCGCCGTCACCTCTGCTGGTGGTTTTAGCCTCCGGTCGTGTTGA 972 0.5453 MAVDLVGVPRMRMEQQEQVAIQEAASAGLKSMEHLIRLLSSQSQSHSPSTSSSPLPNNNNNLNCSQLTDFTVSKFKQVINLLNRTGHARFRRAPPQQQPNPTPQAQPGTTTAFTLDFHKPTILNSKPAVNKDVDQEMELSISPPVSTTTSSTFMSSITGDASVSDGKIGPFLTLPAPPPAPVASGKPPLSSSHRKRCHDATLSGKASSSAHCHCSKRRKSRVKRTIRVPAISSKIADIPPDEFSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAQDDPKMLIVTYEGEHRHNPQPHSPETAGTPAVTSAGGFSLRSC* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2162 323 Pfam Plant zinc cluster domain 194 237 IPR018872 -
Ahy13g2162 323 MobiDBLite consensus disorder prediction 295 323 - -
Ahy13g2162 323 Gene3D WRKY domain 227 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy13g2162 323 SMART WRKY_cls 239 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy13g2162 323 Pfam WRKY DNA -binding domain 241 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy13g2162 323 ProSiteProfiles WRKY domain profile. 234 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy13g2162 323 MobiDBLite consensus disorder prediction 90 110 - -
Ahy13g2162 323 SUPERFAMILY WRKY DNA-binding domain 237 299 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy13g2162 323 MobiDBLite consensus disorder prediction 40 60 - -
Ahy13g2162 323 MobiDBLite consensus disorder prediction 302 323 - -
Ahy13g2162 323 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 16 301 - -
Ahy13g2162 323 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 301 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2162 Ahy-Chr13 41114501 41116176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2162 1 298 WRKY Transcription Factor Family AT2G24570 51.385 1.76e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ahy13g2162 WRKY 5.00E-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2162 - - gmx:732587 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2162 13 41114501 41116176 Ahy13g2162 13 41114501 41116176 ECH
Ahy13g2162 13 41114501 41116176 Ahy3g1855 3 39161855 39163535 hybridization
Ahy11g3094 11 148590356 148592012 Ahy13g2162 13 41114501 41116176 PCT
Ahy1g1876 1 95309450 95311005 Ahy13g2162 13 41114501 41116176 PCT
Ahy13g2162 13 41114501 41116176 Ahy11g3094 11 148590356 148592012 PCT
Ahy13g2162 13 41114501 41116176 Ahy1g1876 1 95309450 95311005 PCT