Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2066 ATGAAGAAGGAAAATCAAAACGTTTCCGTTGTAGCTGTCCTCACTGCATTGTTGTTTGCAGGCACATTGTCATCAGTGTGTGCCTCCAACTCCAAGCAAACAAGTTTCAGTGGCGAACTCAGCCATGTGGAAACCATGTACATCAAGCAGCGGCAGTTGCTCTACTACAGGGACGAGTTCGGTGACAGAGGAGAGAATGTCACTGTAGACCCTTCCCTGGTTTTTGAGAACCAGCGCATTAGGAACGCCTACATTGCCTTGCAAGCATGGAAGCAAGCCATTGTTTCCGATCCTCTGAACTTCACAGCAAACTGGGTAGGATCTGATGTGTGCAGCTACACTGGGGTCTACTGTGCACCCGCACTGGACAACCCTAAGATCCGCACCGTTGCTGGCATTGATCTGAACCATGCGGATATTGCTGGCTACTTACCGGAAGAGCTTGGTCTCTTGGTGGATCTTGCTCTCTTCCATATTAACTCAAACAGGTTCTGTGGCACATTACCGCACCGCTTCGATAGGCTCAAGCTCTTGTTCGAATTGGATCTCAGTAACAACCGCTTCGCCGGCAAGTTCCCTGCTGTCGTATTGAGACTCCCAACCCTCAAGTTCTTGGATCTGAGGTTCAACGAGTTCGAAGGTGGGGTTCCCAGAGAGCTCTTTGACAAAGATCTTGACGCCATTTTCATCAATCACAACAGGTTCGTCTTTGAAATTCCTGATAACTTGGGAAACTCGCCGGTTTCCGTTATTGTGTTGGCCAACAACAGGTTCCACGGTTGCATCCCTGCCAGCATTGGGAACATGTCGAACCTCAACGAGATCATTCTCATGAACAATGAGCTCAGAGCGTGCTTGCCTTCCGAGATTGGCTTGTTGAAGAACCTCACAGTCTTTGATATCAGCTTCAACCAGCTCTTGGGACCATTGCCGGACGCCATTGGAGGAGCTGTGAGCTTGGAGCAGTTAGACGTAGCGCACAACTTGCTCTCTGGGAACATTCCGGCCAGTATTTGCATGCTGCCACATCTTCAGAACTTCACTTATTCTTATAACTTCTTCACAGGGGAGCCGCCGGCGTGCCTGAGGCTGGCATCGTTTGATGACCGGACGAACTGCTTGCCGGGAAGGCCGTTGCAGAGATCCGCGGCCCAATGTAGGTCGTTCTTGTCTAAACCTGTGGACTGTAACTCGTTTGGATGCAAGCCATTTGTTCCTTCCCCTTCACATCCTTCGCCTCCTTCTTCACCTTCTTCACCTTCACCCTCACCCTCTTCACCGCCTTCTATTCCTTCACCTTCTCTGCCTTCTCCCTCTTCGCCACCGTCTACCCCTTCGCCTTCTCCCCCCAATGCACCTGGACAAGCTCCTCCTCCATCAACTCCTACTCCCATACCTTCTCCACCTAGAAGCGAACCTTCCCCAATTTATAGACCACCCTCTCCTCCCTCCACACCACCCTCTTTCCCTCCTATTAATACCCCGCCATCACCACCATCAACATCACCACCATCAACATCTCCACCTTACACTCCACATTCTCCTCCTCCGCCACCGCCTCTTTACTCTCCTCCATCGCCCCCGCCATCACCAATCTATACACCACCTTCACCCACGCAGCCAGCACCTCCATCTGAGCCTTCACCTAACCCAACCCCAACTCCACCATACTGTGTCCGGTCGCCACCGCCTCCGCCGCCAAATTCTCCATCAACACCGGCTCCTGAATTATCCCCGCCCCCACCTTCGCCTTATCATTATACCTCGCCGCCACCTCCCACTCACTCACCTCCGCCACCCACATATAACCAATCACCGCCACCTCCACCACCCTGCATAGAACCTCCTCCACCGCCACCACCTTCTCCCACACCTTATCTCCCACCACCATCCCCATCACCTCCACCTCCACCGCGACCACATCATCCACCGGTCCACTATAGTTCACCACCACCGCCACCGGCACAATATAGTTCACCACCACCGCCACCGGCACAATATAGTTCTCCACCACCCCCTGTCCATTACAGTTCACCACCACCACCAACGCCTGTTCATTATAGTTCTCCGCCGCCACCAGCATCATCACCACCCTGCGAAGAAACTCCACCATCTCCGACCCCTTCCCCACCACCATCCCCTGTATATGAAGGGCCATTGCCACCTGTCGTCGGAGTCCCGTACTCTTCGCCTCCACCACCACCTTTCTATTAA 2214 0.5321 MKKENQNVSVVAVLTALLFAGTLSSVCASNSKQTSFSGELSHVETMYIKQRQLLYYRDEFGDRGENVTVDPSLVFENQRIRNAYIALQAWKQAIVSDPLNFTANWVGSDVCSYTGVYCAPALDNPKIRTVAGIDLNHADIAGYLPEELGLLVDLALFHINSNRFCGTLPHRFDRLKLLFELDLSNNRFAGKFPAVVLRLPTLKFLDLRFNEFEGGVPRELFDKDLDAIFINHNRFVFEIPDNLGNSPVSVIVLANNRFHGCIPASIGNMSNLNEIILMNNELRACLPSEIGLLKNLTVFDISFNQLLGPLPDAIGGAVSLEQLDVAHNLLSGNIPASICMLPHLQNFTYSYNFFTGEPPACLRLASFDDRTNCLPGRPLQRSAAQCRSFLSKPVDCNSFGCKPFVPSPSHPSPPSSPSSPSPSPSSPPSIPSPSLPSPSSPPSTPSPSPPNAPGQAPPPSTPTPIPSPPRSEPSPIYRPPSPPSTPPSFPPINTPPSPPSTSPPSTSPPYTPHSPPPPPPLYSPPSPPPSPIYTPPSPTQPAPPSEPSPNPTPTPPYCVRSPPPPPPNSPSTPAPELSPPPPSPYHYTSPPPPTHSPPPPTYNQSPPPPPPCIEPPPPPPPSPTPYLPPPSPSPPPPPRPHHPPVHYSSPPPPPAQYSSPPPPPAQYSSPPPPVHYSSPPPPTPVHYSSPPPPASSPPCEETPPSPTPSPPPSPVYEGPLPPVVGVPYSSPPPPPFY* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2066 737 MobiDBLite consensus disorder prediction 406 737 - -
Ahy13g2066 737 Pfam Leucine rich repeat N-terminal domain 86 118 IPR013210 -
Ahy13g2066 737 PRINTS Proline rich extensin signature 462 487 - -
Ahy13g2066 737 PRINTS Proline rich extensin signature 437 454 - -
Ahy13g2066 737 PRINTS Proline rich extensin signature 420 436 - -
Ahy13g2066 737 PRINTS Proline rich extensin signature 399 420 - -
Ahy13g2066 737 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 5 11 448 - -
Ahy13g2066 737 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 11 448 - -
Ahy13g2066 737 Gene3D Ribonuclease Inhibitor 249 391 IPR032675 -
Ahy13g2066 737 SUPERFAMILY L domain-like 83 364 - -
Ahy13g2066 737 Gene3D Ribonuclease Inhibitor 83 248 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2066 Ahy-Chr13 37723891 37726970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2066 34 401 Leucine-rich Repeat extension Gene Families AT4G13340 75.339 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2066 - - gmx:100814585 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2066 13 37723891 37726970 Ahy13g2066 13 37723891 37726970 ECH
Ahy13g2066 13 37723891 37726970 Ahy3g1781 3 35258501 35261734 hybridization