Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2049 ATGCCTTCTCTGTCTATCTTCCCGTCACTGCCATCGCTTCAAAACCCTAACTTGGAGCATGCCCACCTCTTCAAATCCATTGGAACCCTAAATTTCAGTTTAACTTCACGAGCAGAGTGTCCCTGCCACTTCTCGCACCACTTCAAAGCCACTCTCTCTCTTCTCTCTAGGGTACAGAACCATAGAATCCCGTCCCGGAGGATACACTGCAAAGTCTTGAAGGATCCTGGGGAAGAGGTTAAGGTGGTTTTGGACTCCGACGGTGGAGATGGCGGCGGCGGCGACGACGATGGCGATGGTGGGGATAAGAGAGAGGTTAAGAAGAAAGAAGGGTCTTCGGGGCCCTTGCCAGAATGGTTGAATTTCAATTCCGATGACGCAAAGACGGTGTTCGCGGCTCTGGCTATATCGCTTGCGTTTCGTGCGTTCGTGGCTGAGCCGAGGTACATTCCTTCGCTGTCAATGTATCCTACCTTTGATGTTGGAGATCGAATTGTTGCTGAAAAGGTTTCATACTACTTTAGAAAGCCATGTGCGAATGACATAGTGATATTCAAAAGTCCTCCAGTCCTTCAAGAAGTTGGATATACTGATGATGATGTTTTCATAAAACGGATTGTTGCAAAGGGAGGTGATATTGTGGAGGTTCGCAAAGGTCGTCTCATAGTTAACGGGGTTGAGAGGAGTGAAAAGTTCATCCTTGAACCACCTTCTTATGAGATGAAGCCCACGCGTGTTCCAGAAAACTACGTCTTTGTGATGGGGGACAACCGCAATAATAGCTATGATTCCCATGTGTGGGGTCCGTTGCCAGCCAAGAATATCATCGGAAGATCAGTGTTCCGATACTGGCCTCCAAATAGAATAGCCGGCACTGTTTCGGAGGATACTTGTCCCCTTGAAACCAAGCAGGACACAACTACTCTAGTTTCTTCTCAATGA 942 0.4788 MPSLSIFPSLPSLQNPNLEHAHLFKSIGTLNFSLTSRAECPCHFSHHFKATLSLLSRVQNHRIPSRRIHCKVLKDPGEEVKVVLDSDGGDGGGGDDDGDGGDKREVKKKEGSSGPLPEWLNFNSDDAKTVFAALAISLAFRAFVAEPRYIPSLSMYPTFDVGDRIVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDDDVFIKRIVAKGGDIVEVRKGRLIVNGVERSEKFILEPPSYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIAGTVSEDTCPLETKQDTTTLVSSQ* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2049 313 Pfam Signal peptidase, peptidase S26 127 284 IPR019533 GO:0004252|GO:0006465
Ahy13g2049 313 PANTHER SIGNAL PEPTIDASE I 106 295 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ahy13g2049 313 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 106 295 - -
Ahy13g2049 313 MobiDBLite consensus disorder prediction 83 113 - -
Ahy13g2049 313 MobiDBLite consensus disorder prediction 96 112 - -
Ahy13g2049 313 TIGRFAM sigpep_I_bact: signal peptidase I 128 286 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ahy13g2049 313 Gene3D Umud Fragment, subunit A 140 298 - -
Ahy13g2049 313 PRINTS Bacterial leader peptidase 1 (S26A) family signature 143 159 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ahy13g2049 313 PRINTS Bacterial leader peptidase 1 (S26A) family signature 202 214 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ahy13g2049 313 PRINTS Bacterial leader peptidase 1 (S26A) family signature 246 265 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ahy13g2049 313 ProSitePatterns Signal peptidases I lysine active site. 204 216 IPR019757 GO:0008236|GO:0016021
Ahy13g2049 313 ProSitePatterns Signal peptidases I serine active site. 152 159 IPR019756 GO:0004252|GO:0016021
Ahy13g2049 313 SUPERFAMILY LexA/Signal peptidase 141 290 IPR036286 -
Ahy13g2049 313 CDD S26_SPase_I 146 278 IPR019533 GO:0004252|GO:0006465
Ahy13g2049 313 ProSitePatterns Signal peptidases I signature 3. 251 264 IPR019758 GO:0004252|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2049 Ahy-Chr13 37074741 37077324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2049 155 285 MADS-box Gene Family AT1G29960 30.827 1.53e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2049 K03100 - gmx:100815810 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2049 13 37074741 37077324 Ahy13g2049 13 37074741 37077324 ECH
Ahy13g2049 13 37074741 37077324 Ahy3g1762 3 34687825 34690343 hybridization