Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2038 ATGACTACCACAACCACCACCACTTCCTCGTCTCATATTCTCCGCCACACCTCCGACTTCATTTCCGGCGTCCTCTCTCAATCGGAGCTCCGGCGACATCTCGCCGCGACCCTCCGCCGCGAGACTACACCACTCTGCAGCCAAACCACCCTCAGACAGCTCAGCCTCGCCTCCGACACCATTGAAAACGCCATCTCCTCCTCCAGCACCTCCATCCGAACCTCTTCCCTCACCCTCGCCGAGAAGCTCCTCCTCCCTCTCCCCGAACTCCCCCTCTCCTCCTTCCTCCTCTCTCTTCTCCTATTCCTCTCGAACCGCCACGTGGATTCCGCCGTACTCCTCCTCCAAATCTTCCACTCCAATCCATCCCTGGCCAGATCCGAAATCGCTCCGGTTCTCTACGATCACCTCTTCTCCCTCCACCTGCTCCCTGTTTTCCGGTGGTTCGATGAGCACAGAACGCGGATTTTGTCCGAATCGAGCAGTGATGCGAGTGATTATTCAATTACGGAGGAGTCAGTGGTGCTGCCGTGCACCAAATTGTTGTCGAGGATGAGTGAGAATCAGGCTTCGAAGCTGAGGGAGTTGGAGAGAGAGTACCAGGAGGCTATCGACCAAAATTGCAGGGTTGTTGCTGTGTATTTCAAGGAGGTTTTGACCAGTAAAAGCAGTGAAGCGTCGATTAGTCCACCGCTGTTGACTCTGAAGAGCACAGAAGATGTTGACGGAGGGAAGAACAAAGAGGAGATTCAAGAATCCCAAATGTCTGTGTTGGAGAATGGACGGTATAATCCAATATGGTCCGAAAGGGAGACATCTATTGAATTCTTGAGCAGCACCTCCAGCAGCAAATCTTCACATATAAATTATTATCCTCAAAGAGTCTCTCCCAGAATCCTCAAACGCCAAAAATCTTCAAAAGATTCAGCACCAGTCTATATGAAATCAACAAGTGAAAATAGACCTTCTTTGGATGGGAATCTGTCTTCTTCTTCTTCAGATTCCGAAGCAGAGAGTGAGGATGACGACAAAAATGTGGCATTGTTGGAGCCTCGACAAAGCCAGTCCCATGAACAAATGCAACCTAACTTGAAAGAATTCAGAGGCTCCCCAGAGTATCATATGGCAGAGTATGATAATCCGCCGCCTGGAACTGCAAAAAATACGCCTCCTAAGGACTTTGTCTGTCCGATAACTAGTAACATATTTGATGATCCTGTGACTCTTGAGACAGGACAAACATATGAACGTAAAGCTATCGAGGAATGGTTCAAAACTGGCAACTCAACTTGTCCAATCACTCGCCAGAAGCTGCAAAACACGCAGTTACCTAAGACAAACTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGAACACAACCCTAATTCAGTTCCACCGTCATGTGAGAGTCCATATGAAGAAAGCAAGGCTGTAACGAAGACAATAAAGGTTTCAACTCTGCCTAAAGATGTCGTAAAACAAGCCACGGTGGATGGGATCATTAGTGAGTTGCGCTATGCAATCAATAATCTCTATATGTCAGATATTCTTGAGGAATCTGAAATGGCTGTGCTTCATATTGAAAAGCTTTGGAGAGAAGTGAATTTAGGAGTGGATATCCATAGCATGCTATCAAAACCTCCAATAATTAATGGGTTTATGGAGATCCTTTTCAATTCTGTTCAGCCCCGGGTGCTACGAGCGGCAGTGTTCCTTCTGGCCGAAACCGGTTCTAGAGACCACTCTGTTATTCAGACGCTTACGCGTGTGGACACTGACGTAGAATGTATCATGGCACTTTTCAAGAAAGGGTTGACAGAAGCTGTTGTGCTGCTGTATCTGCTAAAACCTTCCACTACAAGTCTTGCTGAGATGGCCACACCGGAATCTCTCCTAGCAGCATTCAATAAAGAAGAGGAAAACTTGGTTCCAATATGTTTGAAGCCCAAAACAGCTGCCTTGCTTTTATTCGCACAGGTTATTGGAAGTAGTGAAGAAAGAATTGCGTCGTCAGCTGCCAAGTGTGTGTTCTCTGAAAAAGCAATCGGAAATATTGTCGCCAGTTTAGAAGCTGAGTGGGCAGAGGAGAGGATTGCTGCAGTGGAGATCTTATTAAGATGCATGCAAGAGGATGGGACTTGCCGGAACACCATTGCTGAAAAGGCAGACTTGTCTCCTATTTTGGAAAGTTTCACTGGTGCAACTGATGTAGAGTGTTTAAAGATTGTCCAATTTTTCTCTGAATTAATAAAGTTAAATAGGAGGACATTGAATGAACAAATCCTCCGCTTTATAAAGGAAGAAGGACCTTTTAGTACAATGCATACACTGCTCATTTGTCTGCAGACAGGCCTTCAAGACCAATGTCCTGTCATGGCCGGCCTTTTACTTCAACTTGATCTTCTGGTAGAGCCAAGAAAGATGAGCATATACCGTGAAGAGGCAATTGATACTCTCATTTCATGCCTGAGAAACACAGATTTCCCTGCTGCTCAATTAGCAGCTGCTCATACAATCATGTCACTTCAAGGGAGGTTCGACTTCTCTGGAAAGTCTCTTACCAGAGAAGTCCTTCTTAAACGTGCAGGTGTTGACAGAAGTCCTGGATATCTTGAACAGGTGCTCCAGATCAACAGCTTCTACCCAGAAACTGAAATAACTCCTGAAGAAGAGAAAGCAGCGGATGATTGGGAAAGAAAAATTGCATCTGTTCTAGTCAGCCACGAGTTTGGTATACTTTTCGAGGCTTTAGCAGATGGCATAAATAGCCGAAATCCAGAACTACGGTCAGCATGCTTTATATCAGCTACGTGGCTAGTATACATGTTGACCATTCTACCGGACACAGGGGTACAAGGAGCAGCGCGTGTCTGCTTGCTGAAACAGTTCATAACAAAACTAAATTCTGCTAAGGACATTCATGATAGAGTCCTTTCTATGCTTGCTCTAAATAGTTTTCTCCATTTCCCTGATGGCTTTCACGATCTAACTTCCTACACTAAGGATATCTTAAAAGGTTTGAGAGAGCTTAAGAGAATCTCTCCATTGACATCTGAAATTCTTAAAGTTCTGGTTGAAGAGAATGAATCTAAAAGTGACATATGGATACATAAAGAGCTGATTCGAGTAGATTGCAGTGAGAATGGGGAAGTGCCATCTCTCATTTGTTTCAAGAATAAATTATTTTCGGGCCACTCTGATGGAACTATTAAGGTTTGGATGGTAAAGGATACTTCATTCCATCTCTTGCAAGAGATCCAAGAACATCTTAAGCCTGTAACAAGTTTGGTGATTTCAGAATCTGGTGACAGACTATACAGCGGTTCACTTGATCGAACTGCAAAGGTTTGGTCTATTGGAAAGGCAGCAATTCATTGTGTACAAGTTCATGATATGAAGGAGCAGATTCATAATTTAATTGTAACTGACAGCATATCTTGTTTCACTGCACAGGGCGCTGGTGTCAAGGTTCAATCATGGAATGGAGAATCAAAATTGTTAAATTCTAATAAATACGTTAAGTGCTTGGCTCATGTTCATGGGCGATTATACTGCGGCTGCCACGATAGCAGTGTTCAGGAGATAAATCTGGACACCGGAAACGTCAGTACTATTCAAAGTGGTTCTAAAAAACTACTTGGCAAAGCCTATCCTATTCATGCACTGCAACTTCATGGTGAACTTATATATGCAGCTGGCTCTTCCTTAGATGGATCTGTTATAAAGATGTGGGACAATTCTAGTTATAGATTGGTGGGATCTCTGCAAACCGGATTGGAAGTGCGGGCAATGGCTGTGAGCTCAGAATTAATTTACTTGGGGGGCAAGGGGGTAGCTGTGGAAATCTGGGATAAGACGAAACACAACAAACTTGACACATTACAAACGGCCACAAACAGTAGGGTTCTTTGCATGTCTCTAGACAGGAATGAAGAAATTTTGGTAATTGGAACTTCTGATGGCCAAATTCAGGCATGGAGAGTAAATTAA 3993 0.443 MTTTTTTTSSSHILRHTSDFISGVLSQSELRRHLAATLRRETTPLCSQTTLRQLSLASDTIENAISSSSTSIRTSSLTLAEKLLLPLPELPLSSFLLSLLLFLSNRHVDSAVLLLQIFHSNPSLARSEIAPVLYDHLFSLHLLPVFRWFDEHRTRILSESSSDASDYSITEESVVLPCTKLLSRMSENQASKLRELEREYQEAIDQNCRVVAVYFKEVLTSKSSEASISPPLLTLKSTEDVDGGKNKEEIQESQMSVLENGRYNPIWSERETSIEFLSSTSSSKSSHINYYPQRVSPRILKRQKSSKDSAPVYMKSTSENRPSLDGNLSSSSSDSEAESEDDDKNVALLEPRQSQSHEQMQPNLKEFRGSPEYHMAEYDNPPPGTAKNTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFKTGNSTCPITRQKLQNTQLPKTNYVLKRLIASWKEHNPNSVPPSCESPYEESKAVTKTIKVSTLPKDVVKQATVDGIISELRYAINNLYMSDILEESEMAVLHIEKLWREVNLGVDIHSMLSKPPIINGFMEILFNSVQPRVLRAAVFLLAETGSRDHSVIQTLTRVDTDVECIMALFKKGLTEAVVLLYLLKPSTTSLAEMATPESLLAAFNKEEENLVPICLKPKTAALLLFAQVIGSSEERIASSAAKCVFSEKAIGNIVASLEAEWAEERIAAVEILLRCMQEDGTCRNTIAEKADLSPILESFTGATDVECLKIVQFFSELIKLNRRTLNEQILRFIKEEGPFSTMHTLLICLQTGLQDQCPVMAGLLLQLDLLVEPRKMSIYREEAIDTLISCLRNTDFPAAQLAAAHTIMSLQGRFDFSGKSLTREVLLKRAGVDRSPGYLEQVLQINSFYPETEITPEEEKAADDWERKIASVLVSHEFGILFEALADGINSRNPELRSACFISATWLVYMLTILPDTGVQGAARVCLLKQFITKLNSAKDIHDRVLSMLALNSFLHFPDGFHDLTSYTKDILKGLRELKRISPLTSEILKVLVEENESKSDIWIHKELIRVDCSENGEVPSLICFKNKLFSGHSDGTIKVWMVKDTSFHLLQEIQEHLKPVTSLVISESGDRLYSGSLDRTAKVWSIGKAAIHCVQVHDMKEQIHNLIVTDSISCFTAQGAGVKVQSWNGESKLLNSNKYVKCLAHVHGRLYCGCHDSSVQEINLDTGNVSTIQSGSKKLLGKAYPIHALQLHGELIYAAGSSLDGSVIKMWDNSSYRLVGSLQTGLEVRAMAVSSELIYLGGKGVAVEIWDKTKHNKLDTLQTATNSRVLCMSLDRNEEILVIGTSDGQIQAWRVN* 1331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2038 1330 ProSiteProfiles Trp-Asp (WD) repeats profile. 1296 1330 IPR001680 GO:0005515
Ahy13g2038 1330 SUPERFAMILY WD40 repeat-like 1054 1329 IPR036322 GO:0005515
Ahy13g2038 1330 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1329 - -
Ahy13g2038 1330 Coils Coil 186 206 - -
Ahy13g2038 1330 SMART Ubox_2 393 457 IPR003613 GO:0004842|GO:0016567
Ahy13g2038 1330 ProSiteProfiles U-box domain profile. 389 464 IPR003613 GO:0004842|GO:0016567
Ahy13g2038 1330 CDD RING-Ubox_PUB 394 436 IPR045210 -
Ahy13g2038 1330 SUPERFAMILY ARM repeat 504 992 IPR016024 -
Ahy13g2038 1330 MobiDBLite consensus disorder prediction 309 334 - -
Ahy13g2038 1330 MobiDBLite consensus disorder prediction 283 344 - -
Ahy13g2038 1330 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1296 1330 - -
Ahy13g2038 1330 SUPERFAMILY RING/U-box 387 465 - -
Ahy13g2038 1330 SMART WD40_4 1288 1328 IPR001680 GO:0005515
Ahy13g2038 1330 SMART WD40_4 1200 1246 IPR001680 GO:0005515
Ahy13g2038 1330 SMART WD40_4 1038 1075 IPR001680 GO:0005515
Ahy13g2038 1330 SMART WD40_4 1080 1119 IPR001680 GO:0005515
Ahy13g2038 1330 ProSiteProfiles Trp-Asp (WD) repeats profile. 1087 1120 IPR001680 GO:0005515
Ahy13g2038 1330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 380 467 IPR013083 -
Ahy13g2038 1330 Pfam U-box domain 391 461 IPR003613 GO:0004842|GO:0016567
Ahy13g2038 1330 Pfam WD domain, G-beta repeat 1084 1119 IPR001680 GO:0005515
Ahy13g2038 1330 Gene3D - 1018 1147 IPR015943 GO:0005515
Ahy13g2038 1330 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1329 - -
Ahy13g2038 1330 Gene3D - 1148 1330 IPR015943 GO:0005515
Ahy13g2038 1330 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1087 1120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2038 Ahy-Chr13 36828194 36835664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2038 391 472 U-box Gene Family AT5G42340 47.561 2.02e-17 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2038 - - gmx:100808867 1808.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2038 13 36828194 36835664 Ahy3g1753 3 34527219 34533643 hybridization