Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2009 ATGGGTGAGGACCTACCAAGCCCAAACTCTTGTTATTCTTCTTCTTCGTCAGTTAGTCTGGATCCGGAAAAGCAGAAAAGTGCGGGAAAGAGGGGGAGGGAGAGGAGTAATAACAAGAATAATAATAAGCACCCGGTGTACAGAGGGGTGAGAATGAGAGCGTGGGGCAAGTGGGTCTCTGAAATCAGAGAGCCTCGTAAGAAGAATCGCATCTGGCTCGGCACCTTCGCCACCCCCGACATGGCCGCCCGCGCCCACGACGTCGCCGCCCTCGCCATCAAAGGCTCCTCCGCCATTCTCAACTTCCCACAGCTCGCCCCCCAACTCCCCCGCCCCCACTCTAACTGTCCCCGTGACGTCCAGGCCGCCGCCGCCAAAGCCGCCTCCATGGACTTTCTCTCTCCCTCATCATCATCATCATCGTCGTCGTCGTCACCATCATCATCAATATCGTCGTCCGAGGAGCCATCGACGCCGGAGGAGCTGGGGGAGATAGTGGAGCTGCCAGCACTAGGAACGAGTTTCGAATCGGCGGAGGCGAACAAGGAAATGGTGTTCTTGGAGCCAGTTGATGGGTGGCTGTATCCTCACCCATGGTGGTATCACAGCAGCAGCATTTATGAGGAGGAAGTGAGGGAAGATTGCGGTGTCTATTTTACCGGCGGGGATCAGATTTCAATGCACACTCAGTCTAAGTCTCACCAGTACACCACTCTTGACCTTGATCCTCCTTCCTTGTGGCAATACTAA 750 0.5533 MGEDLPSPNSCYSSSSSVSLDPEKQKSAGKRGRERSNNKNNNKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATPDMAARAHDVAALAIKGSSAILNFPQLAPQLPRPHSNCPRDVQAAAAKAASMDFLSPSSSSSSSSSSPSSSISSSEEPSTPEELGEIVELPALGTSFESAEANKEMVFLEPVDGWLYPHPWWYHSSSIYEEEVREDCGVYFTGGDQISMHTQSKSHQYTTLDLDPPSLWQY* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2009 249 MobiDBLite consensus disorder prediction 131 161 - -
Ahy13g2009 249 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Ahy13g2009 249 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Ahy13g2009 249 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 15 211 - -
Ahy13g2009 249 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Ahy13g2009 249 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Ahy13g2009 249 MobiDBLite consensus disorder prediction 1 48 - -
Ahy13g2009 249 MobiDBLite consensus disorder prediction 7 23 - -
Ahy13g2009 249 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Ahy13g2009 249 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 211 - -
Ahy13g2009 249 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Ahy13g2009 249 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Ahy13g2009 249 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Ahy13g2009 249 MobiDBLite consensus disorder prediction 24 41 - -
Ahy13g2009 249 MobiDBLite consensus disorder prediction 131 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2009 Ahy-Chr13 35944340 35945758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2009 5 216 AP2-EREBP Transcription Factor Family AT5G11590 54.751 3.31e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy13g2009 AP2 3.80E-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2009 K09286 - csv:101219745 248.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2009 13 35944340 35945758 Ahy3g1727 3 33771760 33773113 hybridization
Ahy13g2009 13 35944340 35945758 Ahy15g2932 15 149326243 149327383 PCT
Ahy13g2009 13 35944340 35945758 Ahy5g2340 5 96533480 96534983 PCT
Ahy15g2932 15 149326243 149327383 Ahy13g2009 13 35944340 35945758 PCT
Ahy5g2340 5 96533480 96534983 Ahy13g2009 13 35944340 35945758 PCT