Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1969 ATGTCAAATTTTCATTCCATTTTCCATGTGACATTACTCTTTCTTCTTGTTCTGCAAAATCCAAGAGCAACAGAATGCCACACCAAGGGAATTCGACCGGGGCGTTCTTCTGTGGGGAGTGTGATTCCCATAAACAGAACACGAGCCCAATTATCAGAAGAGCAGTTCATGAGATGGGTCAAGTTCGTCGGTGGCCTCAAACACTCTGTCTTCGGCATTGCCATGAACAAGCTCTTCCCTTCTCACACACTTCACGTTTCCAAGAAACACGGCAAAGGAGGCTTCTCTTCTATTCAATCAGCCGTTGATTCTCTTCCATTCATCAACCTTGTTAGAGTTGTAATTAAGGTCCATGCAGGGGTTTACACAGAGAAAGTTAACATTCCACCATTGAAATCGTTCATAACGATAGAAGGAGAAGGCGCAGATAAGACGATAGTTGAATGGGGTGATACTGCTGATAAGGCGGCACCTGGGACTAAAGGGCAATTACTAGGAACCTTTGGCTCTGCCACATTCGCGGTGAATTCAGCTTACTTCATAGCCAAGAACATCACATTCAAGAACACGGCACCCGTTCCGAGGAACGGAGCAGTGGGGAAGCAGGCAGTGGCGCTGAGAATTTCAGGAGACACAGCCATGTTTCTTGGATGCAAATTCTTGGGAGCACAGGACACACTGTATGATCACCTTGGGAGGCATTACTACAAGGATTGTTACATTGAAGGGTCCGTTGATTTCATATTCGGCAACGCGCTCTCTTTGTTTGAGGGGTGTCACGTGCATGCAATAGCACAGAATGTAGGGGCAGTAACAGCGCAAGGGAGGAGCAGCATATTGGAGGACACGGGGTTCTCATTTGTGCACTGCAAGGTCACGGGGTCAGGGGCTCTGTACCTTGGAAGGGCATGGGGTCCCTTCTCTCGTGTTGTCTTTGCTTACACCTACATGGACAATATCATCATTCCCAAAGGCTGGTATAACTGGGGCGACCCCAACCGTGAAATGACTGTATTCTATGGGCAATACAAATGCACAGGACCTGGAGCAAGCTTTGCTGGGAGAGTAGCATGGTCAAGGGAACTCACTGATCAGGAAGCTAAACCATTTATTTCACTTGCCTACATTGATGGCTCTGAGTGGATCAAATCCCTTTTTTGA 1161 0.4737 MSNFHSIFHVTLLFLLVLQNPRATECHTKGIRPGRSSVGSVIPINRTRAQLSEEQFMRWVKFVGGLKHSVFGIAMNKLFPSHTLHVSKKHGKGGFSSIQSAVDSLPFINLVRVVIKVHAGVYTEKVNIPPLKSFITIEGEGADKTIVEWGDTADKAAPGTKGQLLGTFGSATFAVNSAYFIAKNITFKNTAPVPRNGAVGKQAVALRISGDTAMFLGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQNVGAVTAQGRSSILEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASFAGRVAWSRELTDQEAKPFISLAYIDGSEWIKSLF* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1969 386 Gene3D - 81 385 IPR012334 -
Ahy13g1969 386 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 4 384 - -
Ahy13g1969 386 PANTHER PECTINESTERASE 4 384 - -
Ahy13g1969 386 Pfam Pectinesterase 88 378 IPR000070 GO:0030599|GO:0042545
Ahy13g1969 386 ProSitePatterns Pectinesterase signature 2. 241 250 IPR033131 -
Ahy13g1969 386 SUPERFAMILY Pectin lyase-like 80 384 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1969 Ahy-Chr13 34703509 34705774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1969 89 383 Carbohydrate Esterase AT1G05310 48.185 2.29e-101 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1969 K01051 - gmx:100793773 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g1969 13 34703509 34705774 Ahy13g1969 13 34703509 34705774 ECH
Ahy13g1969 13 34703509 34705774 Ahy3g1695 3 32762121 32764365 hybridization