Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1966 ATGTCCATAAACGAGGATGATGCGAAGAATGATTCTGATAATGATTTGGGTGATAATTTCGATTATCAACCGAATGCAGAAGATGATGCTGAAGACGACGATGTGGATTCGCTGGATTCTACTAGCAAGAGTGAAGAAGTTTGTGGTGTAAAAAGAATAGCAGATTTAATGGTGGAGGATATTTGGAACCTGGAGTTTAGGACAGAGGATGAGGCCTGCCAATTTTATAACGCTTATTCTTGTTGGTATGGATTTGTAATGAGGAAGGACGACGTGGTTAGGGATAATCAAGGTAGAATCATTAGTAGGCAACTTGTTTGCAATAAAGAGGGCTGGAGGAATATGAGGTATCTTGATCTGGATGATAGATCAAGGGAGGCAAGGTCACTAACGCAAACCAAGTGTCCAGCTCGGCTTAGGGTAAAGCTTGACTATGGCTGCGGTAGATGGAAGGTCCAAGTGGAAAATCTTCATAATTTTGGTGTCAGGACCTGCCATATTATGGGGTATATTGCATTCCAGAAGGGTGGATATCGTCATGCTGGCTTCACACGCAAAGATTTGTACAACCACATTGATCGTTATCGTCGGTCAAAGGTTAAAAGCGGGGATGCCAATGCGGCAATAAACTATTTGATTGGCAAGTCAAACAACAATCCGCTGTTCTTTGGAAAGTATACGTTCACTAGTGACGAAAGGCTCGAGCATATTTTTTGGGCAGATGGGCAGCCAATTATCGACTATCACTGCTTTGGAGATATTGTTGCCTTTGATTCAACCTACAAGAAGAATAAATACAACAAGCCTTTGGTAATTTTCTCCGGATGCAATCATCACGGGCAAACTGTTATCTTCGACTCCGGCCTACTATCCGACGAAACCACAGAGACGTATAAGTGGTTGTTGGAAACCTTTGTTAAAGCCATGGCTGGGAAAAGTTCTAAAGCAGTAATAACTGACGGAGACCTTGCCATGCGAGATGCAATCAAGAATGTTCTTCCTGATGCGACCCATCGGTTATGCGGATGGCATCTGCAGAGAAATGCATGCGAAAATATAAAGAATCCTAATTTCCTGCGCGATTTTAAGGGTCTTATATACGACAACAACGACCACAGAGACTTTGATCGGAGATGGGCAGCCATTTTGGATAAGCACAACATTGTTGGGAGTACCTGGATGGAAAAGACGTACGAAACTCGTTCGATGTGGTCTCATTGTTTCCTCCGGGATAAGTTTTTCGGTTACATAAGGATGACATCACAGTGCGAAGGTATAAATTCTCTCATCAGATTTTATGTTAATCGCAAGAACACCCTCATTGACTTCATGCATAACCTGGATAGGGCCTTAAAGGAGTATAGAAACAACGAATTAATCGCTAACTTTAAGTCTCAGTGCTCAGAACCAGTGATGATTACCTCGTTGGAGGTATATGAAAGATTTGCATCATGTTATTTCACTCGAAACATTTTTAAGGAAATTCGTAATGAGATTCAGAGGGCAGGGGCTTTGAATATCAAGGTACTAAGCACAACATTGGACAAGGTCGAGTTCAGTATGACTGCTCTCGGAGACCCGGCCAAAGATCGACGAGTGGAAGTCGATAGAGGTAAGAATATGTTCTCGTGCTCGTGCAAGCTGTTTAAATCACGTGGTATTCCCTGTAGTCATGTCTTCTGTGCCATGAAGTTCGAAAACATACTTGAGTTTCCAGATTTGTTGATCTACAAAAGGTGGACAAAGAATGCAAAGAACGAATTTATTAGCACACAAATGCCTGTGAATGATGACGTCGAAAGGGTCTTAAAGTTTCGAGTTGTTGCATTGGCATCAAATTGCAACAAGCTGTGTGATATTGCTTGCAAGGATGTTGCATACTTTGATAAAGTCCAATCTGAACTTGTCAACTTAATTATCCACCAGCAGTCACGCAAACAAGGCAACTCAACGCCTAATGTTAACGTGGAAGGCATCAACGATCCCTTTGTTGTGAAAAGCAAAAGAGCCCCTTCCAAGAGGTCTTCTTGGAAGAAGAAGAGAGCATGCTCTAATTGCCACAAGTACGGTCATTACTACAAGCGCTGTCCAGAACTGATGCAGCATAGTGTGGAAGGTAACCCCCGCGATCGATCAGACGGCAATGCATCAGCCAGGGACTCAGGTTTTAGTCCAGAAAGGTTTGCTAATTCTTCGAGGTCGTTCTCAGTTAAGTCCGAAAATCACTCAGGACCTAAGACCAAGCCTTTTAAAAAGGCTGGAACAAGGAAGTTTACGGTGACAGGTATGAAGAACCGGAAGGGTAAAGACAACACTTTTGTTGAGCGGAACCTCAATGAAAGCAGTGAATCCATTGACATCGCATCCATGAATGGATTTTTCAACAAAAATCTCTATTCGTTAACACAGGTGAAGGAGTCACAGGAGGACAAGGGACATTCATTCACAAACTATGAATGCGTTAATGATGTCATGGATGAAAAATGTGACACACCATATGTGCAGATCGATGTCCGAGATCCGTCACCATCGTCAATGCCTTGTGGCAATAAACAAGGATCGTACATGGCATTGTTCGCATCAATGCATAGGACACTTTGA 2601 0.4264 MSINEDDAKNDSDNDLGDNFDYQPNAEDDAEDDDVDSLDSTSKSEEVCGVKRIADLMVEDIWNLEFRTEDEACQFYNAYSCWYGFVMRKDDVVRDNQGRIISRQLVCNKEGWRNMRYLDLDDRSREARSLTQTKCPARLRVKLDYGCGRWKVQVENLHNFGVRTCHIMGYIAFQKGGYRHAGFTRKDLYNHIDRYRRSKVKSGDANAAINYLIGKSNNNPLFFGKYTFTSDERLEHIFWADGQPIIDYHCFGDIVAFDSTYKKNKYNKPLVIFSGCNHHGQTVIFDSGLLSDETTETYKWLLETFVKAMAGKSSKAVITDGDLAMRDAIKNVLPDATHRLCGWHLQRNACENIKNPNFLRDFKGLIYDNNDHRDFDRRWAAILDKHNIVGSTWMEKTYETRSMWSHCFLRDKFFGYIRMTSQCEGINSLIRFYVNRKNTLIDFMHNLDRALKEYRNNELIANFKSQCSEPVMITSLEVYERFASCYFTRNIFKEIRNEIQRAGALNIKVLSTTLDKVEFSMTALGDPAKDRRVEVDRGKNMFSCSCKLFKSRGIPCSHVFCAMKFENILEFPDLLIYKRWTKNAKNEFISTQMPVNDDVERVLKFRVVALASNCNKLCDIACKDVAYFDKVQSELVNLIIHQQSRKQGNSTPNVNVEGINDPFVVKSKRAPSKRSSWKKKRACSNCHKYGHYYKRCPELMQHSVEGNPRDRSDGNASARDSGFSPERFANSSRSFSVKSENHSGPKTKPFKKAGTRKFTVTGMKNRKGKDNTFVERNLNESSESIDIASMNGFFNKNLYSLTQVKESQEDKGHSFTNYECVNDVMDEKCDTPYVQIDVRDPSPSSMPCGNKQGSYMALFASMHRTL* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1966 866 ProSiteProfiles Zinc finger CCHC-type profile. 683 698 IPR001878 GO:0003676|GO:0008270
Ahy13g1966 866 Pfam MULE transposase domain 254 348 IPR018289 -
Ahy13g1966 866 MobiDBLite consensus disorder prediction 724 743 - -
Ahy13g1966 866 Pfam FAR1 DNA-binding domain 74 160 IPR004330 -
Ahy13g1966 866 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 156 682 IPR031052 GO:0006355
Ahy13g1966 866 MobiDBLite consensus disorder prediction 1 42 - -
Ahy13g1966 866 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 60 152 IPR031052 GO:0006355
Ahy13g1966 866 MobiDBLite consensus disorder prediction 22 39 - -
Ahy13g1966 866 MobiDBLite consensus disorder prediction 1 16 - -
Ahy13g1966 866 SUPERFAMILY Retrovirus zinc finger-like domains 670 701 IPR036875 GO:0003676|GO:0008270
Ahy13g1966 866 MobiDBLite consensus disorder prediction 703 752 - -
Ahy13g1966 866 PANTHER OS02G0262500 PROTEIN 60 152 - -
Ahy13g1966 866 PANTHER OS02G0262500 PROTEIN 156 682 - -
Ahy13g1966 866 SMART 26again6 542 569 IPR006564 GO:0008270
Ahy13g1966 866 ProSiteProfiles Zinc finger SWIM-type profile. 531 567 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1966 Ahy-Chr13 34587175 34590175 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ahy13g1966 MULE 2.20E-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1966 - - ahf:112755379 1546.95